PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004554
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family TCP
Protein Properties Length: 231aa    MW: 24852.7 Da    PI: 10.3042
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-47643PU_refplantGDBView CDS
gnl|UG|Pta#S21053208PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.39.5e-41792052100
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 
                ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlq a+pai+++tgt++++a+ +  ++s +ss+s+ s++            
  Pta004554  79 PAKRSSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQHAEPAIIAATGTGTIPANYStLNVSLRSSNSSISAShhtkalplafhg 178
                6899*****************************************************************7776555555555522222223334444444 PP

        TCP  89 ...............kaaksaakskks 100
                               ++ ++ ++ +++
  Pta004554 179 tlglgpnvdmgarldHQLRARNEWERA 205
                444443333333332222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-3984194IPR005333Transcription factor, TCP
PROSITE profilePS5136928.0785139IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MASASASAYE GRGGLVGSFV PTSSSSRVDS HMNIASTQPV DASLAMSMSS ATTSNNETQI  60
STSQQQQETV ALDPNKKAPA KRSSTKDRHT KVDGRGRRIR MPATCAARVF QLTRELGHKS  120
DGETIEWLLQ HAEPAIIAAT GTGTIPANYS TLNVSLRSSN SSISASHHTK ALPLAFHGTL  180
GLGPNVDMGA RLDHQLRARN EWERAENRTS MELAVASNRQ SEDRRCRLVV V
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.191980.0embryo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592963.15e-53transcription factor TCP8 isoform X1
RefseqXP_004485466.18e-53transcription factor TCP8
RefseqXP_013462384.12e-53transcription factor TCP8 isoform X2
RefseqXP_021890638.11e-53transcription factor TCP15
RefseqXP_024632177.12e-53transcription factor TCP8 isoform X2
TrEMBLA0A0D6R1482e-98A0A0D6R148_ARACU; Uncharacterized protein
STRINGevm.model.supercontig_128.65e-53(Carica papaya)
STRINGXP_004485466.13e-52(Cicer arietinum)
STRINGAES632142e-52(Medicago truncatula)
STRINGAES632532e-52(Medicago truncatula)