PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta004487
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 234aa    MW: 26939.7 Da    PI: 9.0923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-54251PU_refplantGDBView CDS
gnl|UG|Pta#S25805881PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.65e-53141411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                + pGfrFhPtdeelv +yL++kv++++l++ e ik++diyk++PwdLpk+++ +ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d++++s+ +++ 
  Pta004487  14 MLPGFRFHPTDEELVGFYLRRKVQQRPLSI-ELIKQLDIYKYDPWDLPKMASIGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIYSSdGTKC 112
                579***************************.89***************888889****************************************956667 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +glkk+Lvfykgra kg ktdW+mhe+rl
  Pta004487 113 IGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
                ***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-5913170IPR003441NAC domain
PROSITE profilePS5100557.56814169IPR003441NAC domain
PfamPF023653.1E-2616141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEQKDDIDQA DEMMLPGFRF HPTDEELVGF YLRRKVQQRP LSIELIKQLD IYKYDPWDLP  60
KMASIGEKEW YFYCPRDRKY RNSARPNRVT SAGFWKATGT DRPIYSSDGT KCIGLKKSLV  120
FYKGRAAKGI KTDWMMHEFR LPTAADSKSS LDKNLPPNDA WAICRIFKKN TIAQRALSHA  180
WAPPLAERRV ESISSPMNSD MVSGNCMGAV NFIHDPEEQS NETRNQTSTS SIFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-5611756171NO APICAL MERISTEM PROTEIN
1ut4_B2e-5611756171NO APICAL MERISTEM PROTEIN
1ut7_A2e-5611756171NO APICAL MERISTEM PROTEIN
1ut7_B2e-5611756171NO APICAL MERISTEM PROTEIN
4dul_A2e-5611756171NAC domain-containing protein 19
4dul_B2e-5611756171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257331.11e-117PREDICTED: protein FEZ isoform X2
SwissprotQ9ZVH04e-97FEZ_ARATH; Protein FEZ
TrEMBLA0A1U7ZUM61e-115A0A1U7ZUM6_NELNU; protein FEZ isoform X2
STRINGXP_010257321.11e-114(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-99NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]