PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta003401
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family NAC
Protein Properties Length: 282aa    MW: 31659 Da    PI: 6.8815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-90882547PU_refplantGDBView CDS
gnl|UG|Pta#S20932531PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM109.15.1e-34131561128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgyW 83 
                lp G++F+P+d+el+ e+L+ k+++++      ++++   i+   +i++++P++Lp  ++ +    +fF++ +k+y+tg+rk+r+           + +W
  Pta003401  13 LPSGVKFDPSDQELI-EHLQGKISSDNssphplIDEFIPtIEGGdGICYTHPEKLP-GISRDGLVRHFFHRPSKAYTTGTRKRRKiqtpcaeagEGETRW 110
                699************.99*****99997776543333333555545**********.565666688******************856776665444778* PP

        NAM  84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                ++tgk+++v++ +g ++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pta003401 111 HKTGKTRPVMV-NGMQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 156
                ***********.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-378175IPR003441NAC domain
PROSITE profilePS5100532.3813175IPR003441NAC domain
PfamPF023651.9E-1514156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
XEREEALQIG AGLPSGVKFD PSDQELIEHL QGKISSDNSS PHPLIDEFIP TIEGGDGICY  60
THPEKLPGIS RDGLVRHFFH RPSKAYTTGT RKRRKIQTPC AEAGEGETRW HKTGKTRPVM  120
VNGMQKGCKK ILVLYTNFGK HRKPEKTNWV MHQYHLGSQE EEKEGELVVS KVFYQTQPRQ  180
CNWEKATDSR DAGKANRTEA TQVSERCTAG ETVSSSDRHN YSAYNPLEEQ ARDTHSSPNL  240
SIAQSRSESS DQGIDSXXXE SXHCTPSIGD XXVDLHQNKD XH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-1331565140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.28610.0root| shoot| xylem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010541001.11e-109PREDICTED: uncharacterized protein LOC104814586
SwissprotQ9M0F81e-107NAC75_ARATH; NAC domain-containing protein 75
TrEMBLE0ZFA11e-124E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRINGXP_010541001.11e-108(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-109NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]