PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002805
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 313aa    MW: 34291.9 Da    PI: 9.0553
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-14527PU_refplantGDBView CDS
gnl|UG|Pta#S24128651PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix353.8e-1130117286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W  + v  L++ + e+  +++ g lk ++W+++ + +     ++    ++ kqC++k enl++ryk +k+++ +r   ss ++++f++l+
  Pta002805  30 WHPSTVSRLLDSYGEKCASIK-GYLKIKDWDDIVRTVnahcdASNIAPKTMKQCRDKVENLKRRYKLEKRRAANR-GLSSVHWSFFHKLD 117
                888999999999999888776.559999*****9999998877788899************************98.788889******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-1428119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGSVSDDEDE YGNAGAVVGG STSSVSRCEW HPSTVSRLLD SYGEKCASIK GYLKIKDWDD  60
IVRTVNAHCD ASNIAPKTMK QCRDKVENLK RRYKLEKRRA ANRGLSSVHW SFFHKLDEIM  120
AMATATATGS DKGTSLLEAC QSSFELNQGV DCELPEGFAG ESMPPPPPMS MSMSMSDMVL  180
SVFAGADRGK GLVDNTGGTD CSLDDILNNV CSYNSKNNRR LDFQDSSSPE KQPPPKRKKS  240
SASNSPSVSK KRKGKSTNPI QSLADALVGF SEMYARIEIA KMEMFTKLVL ELAKLRTKRK  300
KRSHSPSIPS DPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1236252RKKSSASNSPSVSKKRK
2299303KKRSH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.132800.0embryo| root| shoot| xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.13e-18Trihelix family protein