PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta002078
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 362aa    MW: 39666.1 Da    PI: 8.2278
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-30273PU_refplantGDBView CDS
gnl|UG|Pta#S21717406PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.36.6e-2680173185
   trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                rWt+qe+l+Lie++r +e+r ++++            + +W+++s++++++g++r+p+qC+++w+nl+++ykki+++e+++ + +s  +++ +++
  Pta002078  80 RWTRQEILVLIEGKRVVESRGKKSRvtvdgqngqvNTESKWSSISSYCKRHGVSREPVQCRKRWSNLSGDYKKIRDWENSHVELQS-FWAMRNDI 173
                8*********************987777888888899*******************************************987776.77777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.63280147IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-680146IPR009057Homeodomain-like
PfamPF138371.5E-1280169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MAVESNGFAF KSPPDLLLSS PRNPNGKASA NEAKIPAGIP KPHAIGKEEA TANGSSNPST  60
ADHAGGDGSD GQDKTPRLPR WTRQEILVLI EGKRVVESRG KKSRVTVDGQ NGQVNTESKW  120
SSISSYCKRH GVSREPVQCR KRWSNLSGDY KKIRDWENSH VELQSFWAMR NDIRRENKLP  180
GFFDREVYSI LDKFIGKQDG SKEAIRVMQE PIFDSGRPCG GGEDTLFSDF EHSAEEEVAG  240
SPEKEAAVML DSPTTTAATP PQPHRQGVRT EKVPTPVAEK GTTSCASGQK RKRTSSEGES  300
DSDLKDQLIA VLERNSRVLS AHVDAQNLNC QLDRNQRRDH ADSLVGVLGK LADALGRIAD  360
KL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.132950.0embryo| needle| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010249232.11e-103PREDICTED: trihelix transcription factor GT-2-like
TrEMBLA0A0D6QYM71e-133A0A0D6QYM7_ARACU; Uncharacterized protein
STRINGVIT_01s0150g00050.t013e-92(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-79Trihelix family protein