PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta001813
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 389aa    MW: 41823.7 Da    PI: 9.8262
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-42175PU_refplantGDBView CDS
gnl|UG|Pta#S24123302PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.43.6e-13286786
   trihelix  7 vlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86
               +  L+++++ ++++ +rg+lk+++We+v+ ++      ++  +sp qCk+k  +++++y+ ++  ++ +   + ss++p+f +++
  Pta001813  2 INSLLDVYEAKWNHRNRGNLKGGDWEDVAMRVsargGGGKSAKSPFQCKNKVASMKQKYRSETLLQGLNgGGGGSSRWPFFARMD 86
               678*****************************65444445689******************998777764588999********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-13388No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
XINSLLDVYE AKWNHRNRGN LKGGDWEDVA MRVSARGGGG KSAKSPFQCK NKVASMKQKY  60
RSETLLQGLN GGGGGSSRWP FFARMDTMLR VPRAENTNGN AAPPGSGGAI GFRPLQAADL  120
GGDSEQEVLR INGGPLLSNG GEQHNKPPTE SHSNDNDNAI LMIRNGDEEC EADDASNTLP  180
PPPPPPQRKP SGGGGAADSD DTSKYATAAG KPNARHRKYL SREVATSIRS FADSILKLER  240
AKMEMFKDSE RLRAEMEARR VDMELKRTEI IMNTQLEIAK LFSGKTKKKK LKRKPNTSES  300
LEIASPSNNG GHGNGAPPPT PLNCGSCQLF GDYVSNGGTS NAQQQQQCSS SVMVHPPHFV  360
PTAISVPVVQ SIPHALQFMP SPVSQPKLG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.51780.0embryo| root| xylem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-22sequence-specific DNA binding transcription factors