PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pta000558
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus
Family Trihelix
Protein Properties Length: 319aa    MW: 34763.4 Da    PI: 10.131
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Pinus_taeda-138882554PU_refplantGDBView CDS
gnl|UG|Pta#S21718290PU_unrefUnigeneView CDS
gnl|UG|Pta#S24122469PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.61.8e-1486171286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W++  +l+Li+a  e+  +l+rg+lk+++W+ev++++       +  ++ +qCk++++ l+k+yk ++    ++   s++++p++++++
  Pta000558  86 WSQTATLTLIDAWGERYLELNRGNLKQKHWKEVAEAVngrpGNNKQAKTDVQCKNRLDTLKKKYKVERSKIFSG---SVTKWPLYTKMD 171
                *************************************87776777788999**************999998886...7889*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.1E-2385173No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDESNNARRH HHHSGGGAAE VVVGGNTGGG GGASNGLSLS LPLPPGSSSV KLNASPPPPP  60
LPPPQTAGEP AGGDRVAAGG GRDDIWSQTA TLTLIDAWGE RYLELNRGNL KQKHWKEVAE  120
AVNGRPGNNK QAKTDVQCKN RLDTLKKKYK VERSKIFSGS VTKWPLYTKM DELIGPARKH  180
HHHPQPLPLP PAPALRPRRH LIESSPNPLN TATSPDMTES CLNGFNGNPS SAKRRKTAAA  240
AVENPDGSPL KELAGAILKF GEVYERTEVV KHQQMMDLEK HRMEFAKDLE LQRMQLFVQT  300
QLELAKIKHA KHGNTEHYL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pta.62580.0embryo| root| shoot| xylem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002971286.12e-74hypothetical protein SELMODRAFT_68039, partial
SwissprotQ9LJG86e-39ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA9NWZ61e-163A9NWZ6_PICSI; Putative uncharacterized protein
STRINGEFJ278845e-74(Selaginella moellendorffii)