PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi010203
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 141aa    MW: 15879.6 Da    PI: 7.1266
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Psi#S37594566PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.41.3e-1024091128
        NAM  91 evlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                +vl+ +g ++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Psi010203   2 PVLV-NGLQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 40 
                5666.78899*********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-13159IPR003441NAC domain
PROSITE profilePS5100516.536159IPR003441NAC domain
PfamPF023653.2E-41140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
RPVLVNGLQK GCKKILVLYT NFGKHRKPEK TNWVMHQYHL GSQEEEKEGE LVVSKVFYQT  60
QPRQCNWEKA TDAGDACKAG ITEATQVPER FTAGENVSST DRHIYSAYDP LEQQAKVTHS  120
SHNLSLAQSR SESSDQVSNS E
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244407.19e-40PREDICTED: uncharacterized protein LOC104588253 isoform X1
RefseqXP_010244410.19e-40PREDICTED: uncharacterized protein LOC104588253 isoform X1
RefseqXP_013609789.19e-40PREDICTED: POU domain, class 4, transcription factor 2-like isoform X3
RefseqXP_013670821.18e-40POU domain, class 4, transcription factor 2-like isoform X3
RefseqXP_013692587.19e-40uncharacterized protein LOC106396501 isoform X3
RefseqXP_016689911.16e-40PREDICTED: uncharacterized protein LOC107907169
SwissprotQ9M0F82e-40NAC75_ARATH; NAC domain-containing protein 75
TrEMBLE0ZFA16e-51E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRINGCagra.0495s0057.1.p2e-39(Capsella grandiflora)
STRINGXP_010244406.13e-39(Nelumbo nucifera)
STRINGTraes_3DS_E799374CA.12e-41(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.19e-43NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]