PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi004611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 205aa    MW: 23337.9 Da    PI: 8.3818
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-14195PU_refplantGDBView CDS
gnl|UG|Psi#S42990439PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM371e-11228102128
        NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                +kk Lvfykg+apkg+kt+W+mheyr+
  Psi004611   2 VKKALVFYKGKAPKGSKTNWIMHEYRM 28 
                79***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.541154IPR003441NAC domain
SuperFamilySSF1019411.44E-14254IPR003441NAC domain
PfamPF023653.3E-4228IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
XVKKALVFYK GKAPKGSKTN WIMHEYRMAE INMATRKKNT LRLDDWVLCR IYNKKSSAEK  60
LEEKKLAEEM ESRRDNEETV EQQKNSQSVQ LEPSRTDAST VSAEGGLPST NSSILISQLP  120
AAMNLSPAHQ NPFYQPQSTD GAQINMKLAN QLIQKQQQQS GQSLNFNLGL DGMQSPYFQL  180
DHSEPSSLFS PYQEYIDSYS IQRSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-22260116171NO APICAL MERISTEM PROTEIN
1ut4_B8e-22260116171NO APICAL MERISTEM PROTEIN
1ut7_A8e-22260116171NO APICAL MERISTEM PROTEIN
1ut7_B8e-22260116171NO APICAL MERISTEM PROTEIN
3swm_A8e-22260119174NAC domain-containing protein 19
3swm_B8e-22260119174NAC domain-containing protein 19
3swm_C8e-22260119174NAC domain-containing protein 19
3swm_D8e-22260119174NAC domain-containing protein 19
3swp_A8e-22260119174NAC domain-containing protein 19
3swp_B8e-22260119174NAC domain-containing protein 19
3swp_C8e-22260119174NAC domain-containing protein 19
3swp_D8e-22260119174NAC domain-containing protein 19
4dul_A8e-22260116171NAC domain-containing protein 19
4dul_B8e-22260116171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0C9RGR22e-31A0A0C9RGR2_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_25871_1634 transcribed RNA sequence
STRINGLus100181421e-29(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.12e-25NAC domain containing protein 32