PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Psi000653
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family YABBY
Protein Properties Length: 128aa    MW: 14497.9 Da    PI: 7.722
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-183a-Picea_sitchensis-4123PU_refplantGDBView CDS
gnl|UG|Psi#S49950892PU_unrefUnigeneView CDS
gnl|UG|Psi#S49952326PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY120.92e-37910472170
      YABBY  72 leelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++ ++++ n+  ++ +++ as+s++ +      d+e +r+p   r Pek+qrvPsaynrfi++eiqrika+nP+i+h+eafsaaaknWah+P+ihfgl
  Psi000653   9 PQQAQQQGPNTGPHDYTRDPASSSTAIND--AYPDNEETRIP-SYRQPEKKQRVPSAYNRFIRDEIQRIKANNPKITHKEAFSAAAKNWAHYPHIHFGL 104
                56666777777777777777777776654..33344444433.4999**************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-3630104IPR006780YABBY protein
SuperFamilySSF470952.36E-74997IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.8E-55197IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAPLLQSLPQ QAQQQGPNTG PHDYTRDPAS SSTAINDAYP DNEETRIPSY RQPEKKQRVP  60
SAYNRFIRDE IQRIKANNPK ITHKEAFSAA AKNWAHYPHI HFGLMLDNRR QSNSEDGGDV  120
LNAEVCNN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Psi.40830.0shoot
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017779.15e-38PREDICTED: axial regulator YABBY 5-like
SwissprotQ9XFB02e-33YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA9NY992e-91A9NY99_PICSI; Uncharacterized protein
STRINGPOPTR_0006s06700.17e-37(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-35YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]