PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID model.Picochlorum_contig_29.g11.t1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Picochlorum
Family AP2
Protein Properties Length: 431aa    MW: 47925.6 Da    PI: 7.614
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
model.Picochlorum_contig_29.g11.t1genomeRutgersView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-12149197152
                                 AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                                         s y+GV++++++gr++A+I++    +  r++++lg +  +e Aa+a++ a++k
  model.Picochlorum_contig_29.g11.t1 149 STYRGVTRHSRSGRFEAHIWV----KeLRRQVYLGGYEHEEHAAEAYDIAALK 197
                                         56*******************....4456**********************98 PP

2AP239.71.2e-12244292255
                                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                          ++GV++++ +grW+A+I  p   g +k+++lg f  + +Aa+a+++   +l+g
  model.Picochlorum_contig_29.g11.t1 244 TFRGVTRHP-TGRWEARIGIP---G-SKHVYLGLFTEEIGAARAYDKSLVRLRG 292
                                         69*******.9*********8...3.6**********99*********999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-19149210No hitNo description
SuperFamilySSF541713.92E-13149210IPR016177DNA-binding domain
PfamPF008475.5E-7150197IPR001471AP2/ERF domain
PROSITE profilePS5103215.923150208IPR001471AP2/ERF domain
SMARTSM003803.8E-24150214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-15150208IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-13243300IPR016177DNA-binding domain
CDDcd000188.23E-16243299No hitNo description
PROSITE profilePS5103215.725244300IPR001471AP2/ERF domain
SMARTSM003801.4E-19244306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-15244300IPR001471AP2/ERF domain
PfamPF008473.0E-5245285IPR001471AP2/ERF domain
PRINTSPR003672.3E-5245256IPR001471AP2/ERF domain
PRINTSPR003672.3E-5282302IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MVGGAVEHLV ERAPPVQEDS GAKESAPDDR RNNMPTTLGT GSSFSDAMQQ YFGGDASTQQ  60
EIMSKVESLI HQHNVSLTAQ QEKEKTENTD NLPGLSVNNP LESTVIAKNG PLPQGMVPES  120
VTTTMPGQKK KRQRARAKPQ DGTRERQTST YRGVTRHSRS GRFEAHIWVK ELRRQVYLGG  180
YEHEEHAAEA YDIAALKSKG RTTKINFDIS KYEDLLDCID RMTMDELVMA IRRQSQGFSR  240
GTSTFRGVTR HPTGRWEARI GIPGSKHVYL GLFTEEIGAA RAYDKSLVRL RGKGASTNFS  300
LGDYREELCD FHRLQSKILQ GDPRVMEITS NQKHYEAWLK HGSMAHPVLL NDDENAAHTK  360
SLVEEDLNMV KRMIDQNGST PSHAWFDGNG LLAGIESNEM LTRQHHTSDP SVGPALEALK  420
RAAQSTHHAT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128133KKKRQR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.14e-45AP2 family protein