PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G264900.1.p
Common NamePRUPE_ppa008730mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 322aa    MW: 35682.6 Da    PI: 5.5524
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G264900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.8e-1978126355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r++lg+f t+eeAa+a+++ ++k++g
  Prupe.8G264900.1.p  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTPEEAARAYDREARKIRG 126
                         9*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-3877140IPR001471AP2/ERF domain
PROSITE profilePS5103223.6377134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3277135IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2277135IPR016177DNA-binding domain
PfamPF008473.0E-1278126IPR001471AP2/ERF domain
CDDcd000181.31E-3378135No hitNo description
PRINTSPR003672.5E-117889IPR001471AP2/ERF domain
PRINTSPR003672.5E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MCGGAILSNL IPRNRGLRVT ASDIWPNSPF AKLNPDNFFD YNPSPLTRTD SSPRKRAQPT  60
SGNRQEEKPP KRARKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTFNTP EEAARAYDRE  120
ARKIRGKKAK VNFPNEDDDI PTQTYLRNPN PPSLFQTSSE NLSNSHMPKS FDLGFGYDLN  180
QIATISSNSN SKGLSSMNLV NTDPTVISGE ENSGSGSDGA YSSTAGLLGC NQNGSSCCYG  240
EAEVKELEET KEGILNKDAI AIMEENEVQK LSEELMAYEN MMKFYQIPYL DGQSTATQHP  300
PAQEGMVGDL WSFDDDRVSA P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2178134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.202590.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8250970.0HQ825097.1 Prunus persica cultivar Venture ethylene responsive factor (ERF2.b) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200418.10.0hypothetical protein PRUPE_ppa008730mg
TrEMBLM5VKI00.0M5VKI0_PRUPE; Uncharacterized protein
STRINGPOPTR_0014s12090.11e-105(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-34ethylene-responsive element binding protein