PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G227500.2.p
Common NamePRUPE_ppa025349mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 211aa    MW: 22981.1 Da    PI: 7.9013
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G227500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.65.9e-40151161101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq+++l
  Prupe.8G227500.2.p  15 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACL 105
                         7*************************99*************************************************************** PP

              DUF260  91 kaelallkeel 101
                         +a+l +++++l
  Prupe.8G227500.2.p 106 QAQLMQVRAQL 116
                         ****9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.88514116IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3815113IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MASGAGSNGS GTGSPCGACK FLRRKCASDC IFAPYFCSEQ GPARFAAIHK VFGASNVSKL  60
LLHVPVHDRC EAVVTIAYEA QARIRDPVYG CVAHIFALQQ QVACLQAQLM QVRAQLAHQS  120
LVDSRNIEST QWPGNVNGVT NFPNYPSYMN PISPQSSLES IDHNCSDIAM NMQEIQSSRD  180
DFSYQACSKK RPYNGDLGEL QALALRMMRN *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199359.11e-157hypothetical protein PRUPE_ppa025349mg
SwissprotQ9SLB74e-78LBD16_ARATH; LOB domain-containing protein 16
TrEMBLM5VUH71e-157M5VUH7_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s04210.11e-110(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.11e-63lateral organ boundaries-domain 16