PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G227400.1.p
Common NamePRUPE_ppa025889mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 240aa    MW: 26428.1 Da    PI: 6.271
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G227400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.74.7e-3971071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf++eq + +f ++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l
  Prupe.8G227400.1.p   7 PCGACKFLRRKCVRGCIFAPYFCHEQgATHFSAIHKVFGASNVSKLLAHLPLSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNL 97 
                         7*************************89*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +a+la+lk++
  Prupe.8G227400.1.p  98 QAQLASLKDQ 107
                         *****99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2246108IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MAGSGSPCGA CKFLRRKCVR GCIFAPYFCH EQGATHFSAI HKVFGASNVS KLLAHLPLSD  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVNLQAQ LASLKDQAAQ SFVNGSAVAN  120
PNEKFYGKLP SHTEEAQSWF HELENSSNSM PQFNSTHIKN PGTTSYYENE IMNSNNSVNG  180
SYENSVNIPE ENVSYGSFEE GTSHSMSSFG MQTNYNRQWG FQDADELQSV AFSYIHQHS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199390.11e-180hypothetical protein PRUPE_ppa025889mg
SwissprotQ9M2J71e-69LBD29_ARATH; LOB domain-containing protein 29
SwissprotQ9SLB62e-69LBD17_ARATH; LOB domain-containing protein 17
TrEMBLM5VHN01e-180M5VHN0_PRUPE; Uncharacterized protein
STRINGVIT_07s0005g03020.t011e-111(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42440.11e-60LBD family protein