PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G227300.1.p
Common NamePRUPE_ppa019939mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 212aa    MW: 23398.3 Da    PI: 5.6119
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G227300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.1e-3871071100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC ++C++apyf++eq + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l
  Prupe.8G227300.1.p   7 PCGACKFLRRKCIRGCIFAPYFCHEQgATHFAAIHKVFGASNVSKLLAQLPVSDRCRAALTISYEAQARVQDPIYGCVSHIFALQQQVISL 97 
                         7*************************89*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +a+la++ke+
  Prupe.8G227300.1.p  98 QAQLASVKEQ 107
                         ******9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0926108IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-367105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCIR GCIFAPYFCH EQGATHFAAI HKVFGASNVS KLLAQLPVSD  60
RCRAALTISY EAQARVQDPI YGCVSHIFAL QQQVISLQAQ LASVKEQAAK GFSNANPIEK  120
YNMNVQSWPQ SESSNILMPQ SMNLNNINDS MLPFYSENKN SNSFEGDRNF MIPEVLNDMY  180
GSYGDGEASN SMSSLDMQMS NMQWGFDQDQ D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007200091.11e-159hypothetical protein PRUPE_ppa019939mg
SwissprotQ9M2J72e-63LBD29_ARATH; LOB domain-containing protein 29
TrEMBLM5W3D81e-158M5W3D8_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s04200.14e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.19e-65lateral organ boundaries-domain 29