PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G224700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 180aa    MW: 20470.7 Da    PI: 6.5182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-194799156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+G+r+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+  ++g+
  Prupe.8G224700.1.p 47 TRYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 99
                        68********.**********98887..**********************988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.9E-134799IPR001471AP2/ERF domain
CDDcd000185.73E-3147108No hitNo description
PROSITE profilePS5103224.86948106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3048107IPR001471AP2/ERF domain
SMARTSM003805.0E-3548113IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2348107IPR016177DNA-binding domain
PRINTSPR003672.1E-114960IPR001471AP2/ERF domain
PRINTSPR003672.1E-117288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MHYISCMSQA QPIFLPPNLN KDLFLLNMEG KGVENQQKEQ TKVRDQTRYR GIRRRPWGKF  60
AAEIRDPSRN GARLWLGTFE TAEEAARAYD RAAFGFRGHL AILNFPNDYQ YHNPSSSLIS  120
TSSSSSSSPF SAADIGKSTN FGRGQEEEEV IEFEYLDNMV LEELLDTKED HHRQGKPTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2849106663ATERF1
3gcc_A4e-2849106663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199104.11e-111hypothetical protein PRUPE_ppa020642mg
SwissprotQ9LTC51e-47ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLM5VTS01e-111M5VTS0_PRUPE; Uncharacterized protein
STRINGPOPTR_0002s04030.11e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-37ERF family protein