PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G142100.1.p
Common NamePRUPE_ppa022806mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 222aa    MW: 24090.1 Da    PI: 7.357
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G142100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.23e-292103197
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C+l++++     p++q++++ +v+k+FG++ + ++++a++e++r+++++sl++eA  r+ +Pv+Ga+g++l+++++
  Prupe.8G142100.1.p   2 SCNGCRVLRKGCSDNCMLRQCLqwiqdPQAQAHATVFVAKFFGRAGLFSFINAVSESQRPALFQSLFFEAVGRTINPVNGATGLLLSGKWE 92 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelall 97 
                         ++q+++e++l+
  Prupe.8G142100.1.p  93 VCQAAVETVLR 103
                         *****999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.4661107IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDNCMLR QCLQWIQDPQ AQAHATVFVA KFFGRAGLFS FINAVSESQR  60
PALFQSLFFE AVGRTINPVN GATGLLLSGK WEVCQAAVET VLRGGTLEPL PEYTRDDHQN  120
CVHDHHIRLQ RQSPKKKRSS NLAFDDTDDH DVANCQLPDL DLCLTAAGGL TSRTNRGDCR  180
AGTPSSAEES ETTTLGSSSS SADHCCGNNL KGTTKLLRLF I*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199277.11e-164hypothetical protein PRUPE_ppa022806mg
SwissprotQ9SN234e-63LBD38_ARATH; LOB domain-containing protein 38
TrEMBLM5VIB11e-164M5VIB1_PRUPE; Uncharacterized protein
STRINGPOPTR_0007s10010.12e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-63LOB domain-containing protein 38