PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G113000.1.p
Common NamePRUPE_ppa006275mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 421aa    MW: 47835.5 Da    PI: 9.3898
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G113000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.6e-181099398
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                         +l+ s++l+ ++l++p +f++++  +   s+  tl  ++g++W+v +  +k ++++++ +GW+eF +   +++g f++F+++g+s+f  +v+
  Prupe.8G113000.1.p 10 HKLILSSTLQAKQLMIPENFVKKFRDD--LSTVATLSVPDGNVWRVGI--KKADNKFWFHDGWQEFIERYSIRVGYFLTFRYEGHSSF--TVH 96
                        5677789999999***********877..88899999***********..**********************************9999..888 PP

                        EE- CS
                  B3 96 vfr 98
                        +f+
  Prupe.8G113000.1.p 97 IFN 99
                        885 PP

2B3598.5e-19306395497
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl ps+  + ++++lp  fae++ +g++     ++l++++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l+
  Prupe.8G113000.1.p 306 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQSSDGRQWPVRCLYRGGR--AKLSQGWYEFTLENNLGEGDVCVFELLKMKEVVLK 391
                         78899******************877743...5***************665555..66***********************9887777677 PP

                         EEEE CS
                  B3  94 vkvf 97 
                         v+vf
  Prupe.8G113000.1.p 392 VTVF 395
                         7765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.1E-23699IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-23699IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-19799No hitNo description
PROSITE profilePS5086313.6628101IPR003340B3 DNA binding domain
SMARTSM010192.5E-179101IPR003340B3 DNA binding domain
PfamPF023623.4E-151099IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-24296396IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-24297396IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-22301396No hitNo description
SMARTSM010198.1E-18303398IPR003340B3 DNA binding domain
PROSITE profilePS5086313.719303398IPR003340B3 DNA binding domain
PfamPF023626.0E-17306394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MKNMIRPCFH KLILSSTLQA KQLMIPENFV KKFRDDLSTV ATLSVPDGNV WRVGIKKADN  60
KFWFHDGWQE FIERYSIRVG YFLTFRYEGH SSFTVHIFNL TTAEINYQPN ALSSTGVSVY  120
RHQVFEEMED DDSVEILGSS PKSIVTDSLR DKLFGDCANQ LIPGKDYNPP ALQNLFNGSK  180
PKNCTNWPDT GNPHPSKGSG LQAGNQSSRE IGVQFNVTEL KKTVDEVKLR SSGEDIRSMK  240
KTMRKKRKLD PTVQDSSSQH EKEVEIRFRF YESASARKRT VTAEERERAI NAAKTFEPVN  300
PFCRVVLRPS YLYRGCIMYL PSCFAEKNLN GVSGFIKLQS SDGRQWPVRC LYRGGRAKLS  360
QGWYEFTLEN NLGEGDVCVF ELLKMKEVVL KVTVFCVVEA AGFVNQPPQQ NASQAKMIRN  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-7126939915144B3 domain-containing transcription factor VRN1
4i1k_B3e-7126939915144B3 domain-containing transcription factor VRN1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at lower levels in aerial parts. {ECO:0000269|PubMed:12114624}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G113000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199856.10.0B3 domain-containing transcription factor VRN1 isoform X1
SwissprotQ8L3W11e-135VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLM5W2Q10.0M5W2Q1_PRUPE; Uncharacterized protein
STRINGEMJ010550.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-134B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]