PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G096300.1.p
Common NamePRUPE_ppa014060mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 90aa    MW: 10263.5 Da    PI: 9.7503
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G096300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.7e-09853346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                        +WT+   + + +a +++ ++   +W  +a+ +g g+t++++k ++  
  Prupe.8G096300.1.p  8 SWTAKQNKAFEKALALYDKDtadRWYNVAKAVG-GKTPEEVKRHYER 53
                        7********************************.**********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.94459IPR017884SANT domain
SMARTSM007176.9E-8557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-6761IPR009057Homeodomain-like
CDDcd001677.42E-7855No hitNo description
SuperFamilySSF466891.57E-12862IPR009057Homeodomain-like
PfamPF002494.3E-7853IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010114Biological Processresponse to red light
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MASSSMSSWT AKQNKAFEKA LALYDKDTAD RWYNVAKAVG GKTPEEVKRH YERLVEDVKH  60
IESGQVPFPD YRTTGGNDEE KRMRNLKLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-42189193RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.65571e-150fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007201464.17e-62hypothetical protein PRUPE_ppa014060mg
SwissprotQ58FS35e-43RAD_ANTMA; Transcription factor RADIALIS
TrEMBLM5W0A78e-62M5W0A7_PRUPE; Uncharacterized protein
STRINGPOPTR_0004s16270.16e-41(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-41RAD-like 1