PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G231100.1.p
Common NamePRUPE_ppa008830mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 334aa    MW: 37851.5 Da    PI: 5.7397
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G231100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.81.9e-34131042102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F++k+y++++d+++++li+w + +nsf+v+d+ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++
  Prupe.7G231100.1.p  13 FVMKTYQMVNDPTTDKLITWGRANNSFIVVDPLDFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANECFLRGQTH 94 
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll+++ r+k+
  Prupe.7G231100.1.p  95 LLRNVVRRKH 104
                         *****99985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.8E-559102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.43E-3410102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.6E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.6E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MMMEENNNVI APFVMKTYQM VNDPTTDKLI TWGRANNSFI VVDPLDFSQR LLPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDR WEFANECFLR GQTHLLRNVV RRKHMGKNSY SNSNSNSTTC  120
LLQGKHEELD DEEIVMEIAR LKQEQKALEE EMENMNKRLE ATERRPQQMM AFLHKVAEDP  180
EILPRIMLEK DRTFRAQLGE KKRRVMMITS TSSSSSGMGA TNSVKTEDED DGTVGVISSS  240
PEPGFEMESF YSTSPETSTA REWGTQRRVV DRVRAVQDPY NMNPTVSGHV IGNSSNSGYG  300
YGNRNVGAGV GYLTEEPIPA PPPYPFSLLE GGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-251010226129Heat shock factor protein 1
5d5v_B1e-251010226129Heat shock factor protein 1
5d5v_D1e-251010226129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G231100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423775.10.0heat stress transcription factor C-1
SwissprotQ9LV522e-90HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A251NFN30.0A0A251NFN3_PRUPE; Uncharacterized protein
STRINGEMJ034480.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-91heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]