PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G188000.1.p
Common NamePRUPE_ppa001606mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 795aa    MW: 91105.4 Da    PI: 6.9124
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G188000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR198.57.3e-3184178291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                         fYn+YA+++GFs+r+s s++s+r+g i++r fvC +eg+r +++ k     + + +r+r+etr+gCka+l+vk +++gkw+v+ +++eHnH
  Prupe.7G188000.1.p  84 FYNSYARRTGFSTRVSMSRRSRRDGAIIQRSFVCAREGFRVDKHGKpgsdrEGRVKRPRPETRVGCKAMLVVKIQDSGKWVVSAFVKEHNH 174
                         9*****************************************999999988888899********************************** PP

                FAR1  88 elap 91 
                         el+p
  Prupe.7G188000.1.p 175 ELVP 178
                         **86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.6E-2984178IPR004330FAR1 DNA binding domain
PfamPF105516.8E-30299391IPR018289MULE transposase domain
PfamPF044345.7E-10567613IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.633579615IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-6590617IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MEFEPLSLGN DVIEFDMMGL GDIDHSVDHD DVLHDSPPTA IPTPSVSDVV GSAAIFEPYI  60
PEGDTNLEPY EGMEFESEEA SKAFYNSYAR RTGFSTRVSM SRRSRRDGAI IQRSFVCARE  120
GFRVDKHGKP GSDREGRVKR PRPETRVGCK AMLVVKIQDS GKWVVSAFVK EHNHELVPPE  180
RVHCLRSHRH VSGAAKSLID TLQGAGIGPR GIMSALVKEY GGIKNIGFTE RDCRNYMRSS  240
RQRTLGGDTQ LLLDYLKDKQ AKDPAFFFAV QGDEDQCMSN VFWADPKART DYTYFGDTVT  300
FDTTYRSNRY RLPFAPFTGV NHHGQPVLFG CALLINESEA SFLWLFKTWL IAMSGRPPLS  360
ITTEHDRVIS LAITQVFPDT RHRFCKWHIF KECQEKLSYV HCEHSNFEAE LHKFVNLTES  420
VEEFESCWFS LIDKYDLREH QWLQLIYADR RQWVPVYLRD TFFAEISITQ RSDSMNSYFD  480
GYVNASTTLL LFVKQYEKAL ESRYEKEVKA DYDTINTAPI LKTPSPMEKQ AAGLYTRKMF  540
MKFQEELVET LTFLAMKVED EEAGSIYQVS KFGESHKAYF VRFNVHEMKA FCSCQRFEFS  600
GLLCAHILTV FRVTNVLTLP PHYILKRWTR NAKSGVILEE HASDLLNKSQ ESLTVRYNNL  660
RHEALKYVDE GVKTVEIYNV SMDALEEAAN RVSLAKKNDG RLAIISRAGR DDGFHLGSRS  720
NTFGDHKWGF ETLSADEQDK KIQKLERQLD RAQRKCELYR ASLLSVLKDI EEQKLQLSVK  780
VENIKLGMKE SSIV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142KRPRP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G188000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203789.10.0protein FAR1-RELATED SEQUENCE 5
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLM5W6V80.0M5W6V8_PRUPE; Uncharacterized protein
STRINGEMJ049880.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]