PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G156100.1.p
Common NamePRUPE_ppa019533mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 82aa    MW: 9221.21 Da    PI: 9.5781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G156100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.1e-111561347
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                        +WT+   +++ +a +++ ++   +W ++ar +g g++++++k ++  +
  Prupe.7G156100.1.p 15 SWTPKQNKQFEKALALYDKDtpdRWQKVARAVG-GKSAEEVKQHYEVL 61
                        7********************************.***********876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.6021166IPR017884SANT domain
SMARTSM007172.5E-91264IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-141469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-61568IPR009057Homeodomain-like
PfamPF002496.2E-91561IPR001005SANT/Myb domain
CDDcd001671.46E-71662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSLSSSR NSNSSWTPKQ NKQFEKALAL YDKDTPDRWQ KVARAVGGKS AEEVKQHYEV  60
LLEDVNHIEA GRVPFPRYRG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-32679174RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203252.12e-55hypothetical protein PRUPE_ppa019533mg
SwissprotQ1A1734e-33RADL6_ARATH; Protein RADIALIS-like 6
SwissprotQ58FS33e-33RAD_ANTMA; Transcription factor RADIALIS
TrEMBLM5VTR42e-55M5VTR4_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s12390.16e-42(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.15e-32RAD-like 1