PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G125800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 284aa    MW: 30797.4 Da    PI: 8.873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G125800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068103125123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++Fs+   L  H  +H
  Prupe.7G125800.1.p 103 YQCKTCDRCFSSFQALGGHRASH 125
                         9***********99999998887 PP

2zf-C2H212.70.00038190212123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg  F++   L  H+r+H
  Prupe.7G125800.1.p 190 HECSVCGAEFTSGQALGGHMRRH 212
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.97E-9102125No hitNo description
PfamPF139127.5E-10102127IPR007087Zinc finger, C2H2
SMARTSM003550.11103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.972103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576674.97E-9185212No hitNo description
Gene3DG3DSA:3.30.160.606.2E-4188212IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.7E-13189213IPR007087Zinc finger, C2H2
SMARTSM003550.012190212IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743190212IPR007087Zinc finger, C2H2
PROSITE patternPS000280192212IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MMIIKGKRTK RQRLASPLAH ASTATASSSS SAGHDHQHQV LVGPTETSPA TSADQFTEIS  60
TEEEEDMANC LILLAQGNST PKTQHPILVH NNKASASAGL YVYQCKTCDR CFSSFQALGG  120
HRASHKKPNK ANMNITQDNK KALSFVEEAE EYDRFNNTST TLSLQISNRD YRASSSAATP  180
VNNSKANKVH ECSVCGAEFT SGQALGGHMR RHRTFMNTTT TATAAAMSSP QPQSGSKRPR  240
SILQLDLNLP APEEERLETK FPFGPKKEQV IVFSTSPLVG CHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G125800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423318.10.0zinc finger protein ZAT5
TrEMBLA0A251NAP40.0A0A251NAP4_PRUPE; Uncharacterized protein
STRINGXP_008241377.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-55C2H2 family protein