PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G092400.4.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 235aa    MW: 27146.1 Da    PI: 7.7752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G092400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.98.3e-4961331129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lppGfrF+Ptd elv++yLk+kv gk+l++ ++i+evdi+k+ PwdLp k++ +++ +wyfF+++++ky+tg r +ra + gyWkatgkd+
  Prupe.7G092400.4.p   6 LPPGFRFSPTDVELVQYYLKRKVMGKRLHF-NFIAEVDIHKYAPWDLPeKSCWQGDLKWYFFCPTSRKYPTGARVKRANECGYWKATGKDR 95 
                         79**************************99.99***************656666788********************************** PP

                 NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         +vl  +ge+ g  ktL+f++grapkge+tdWvmheyrle
  Prupe.7G092400.4.p  96 SVLY-NGEVSGWIKTLIFHRGRAPKGERTDWVMHEYRLE 133
                         ****.999*****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-574155IPR003441NAC domain
PROSITE profilePS5100554.0936155IPR003441NAC domain
PfamPF023657.9E-257132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MRKSPLPPGF RFSPTDVELV QYYLKRKVMG KRLHFNFIAE VDIHKYAPWD LPEKSCWQGD  60
LKWYFFCPTS RKYPTGARVK RANECGYWKA TGKDRSVLYN GEVSGWIKTL IFHRGRAPKG  120
ERTDWVMHEY RLEAKNLADS DVLQDSYVIC MIFQKDGPGP RNGAEYGAPF KEEDWTDDEA  180
EICSEAVPHA NMPEPNLVVP SNYNSSIITS THSPEVIMLQ WRSLMFPMMI FCQC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-46615515168Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.202381e-149fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G092400.4.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020426054.11e-136NAC domain-containing protein 82
SwissprotQ9FY823e-85NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A251N9401e-177A0A251N940_PRUPE; Uncharacterized protein
STRINGEMJ058871e-162(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.12e-88NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]