PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G060700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 196aa    MW: 21933.2 Da    PI: 11.0589
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G060700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2077126255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +grW+AeIrdp+    r kr++lg+f+taeeAa  +++a+  l+g
  Prupe.7G060700.1.p  77 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVLLKG 126
                         89*******.**********84....34*********************987766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.32977134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3077135IPR001471AP2/ERF domain
PfamPF008475.9E-1377121IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2277135IPR016177DNA-binding domain
CDDcd000188.58E-3377136No hitNo description
SMARTSM003803.6E-3777140IPR001471AP2/ERF domain
PRINTSPR003671.1E-107889IPR001471AP2/ERF domain
PRINTSPR003671.1E-10100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVKFSEQVTT MIKLITHENQ NSPVNPTHLP PKLVRIILTD ADATDSSSDE EDSGVRRVKR  60
HKLGSRSPGS DQTRLNKFRG VRRRPWGRWA AEIRDPTRRK RVWLGTFDTA EEAATVYDRA  120
AVLLKGPDAV TNFPNAAMTE AKVVVGVGVL PTSVSAPRFQ RTFSAIQSIL NTKLILMIFI  180
AKLNENYKYS QKKKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1978134663ATERF1
3gcc_A1e-1978134663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15562RRVKRHKL
281100RRRPWGRWAAEIRDPTRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695551e-115KT369555.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203461.16e-96hypothetical protein PRUPE_ppa022995mg, partial
SwissprotO046824e-40PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLM5WD177e-96M5WD17_PRUPE; Uncharacterized protein (Fragment)
STRINGPOPTR_0019s15190.14e-43(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.17e-30cytokinin response factor 1