PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G354000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 224aa    MW: 23337.9 Da    PI: 8.3639
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G354000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.6e-183585155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + ++GVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a+++a++kl+g
  Prupe.6G354000.1.p 35 CSFRGVRQRT-WGKWVAEIREP---N-RgARLWLGTFNTSTEAALAYDEAARKLYG 85
                        579****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-133585IPR001471AP2/ERF domain
CDDcd000185.25E-293595No hitNo description
SMARTSM003809.5E-373699IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-303694IPR001471AP2/ERF domain
PROSITE profilePS5103221.433693IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-203794IPR016177DNA-binding domain
PRINTSPR003672.2E-93748IPR001471AP2/ERF domain
PRINTSPR003672.2E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEKEGRKVGK KATASMGRSR KGCMKGKGGP ENALCSFRGV RQRTWGKWVA EIREPNRGAR  60
LWLGTFNTST EAALAYDEAA RKLYGSSAKL NLPDHKPSSS STANSSCSRT KSTSDQYNMK  120
GGFGESVKGG SSGDGCGKLG GEACSDSLIF GGWSIGDGLW ESTTTTGGAS ASTGTTSPVL  180
SSWAGLCGEK DFLEMNDIGA DVMMGGGDEF INWDALGPPS SWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-173793360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G354000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422296.11e-160dehydration-responsive element-binding protein 2D
TrEMBLA0A251P0B61e-158A0A251P0B6_PRUPE; Uncharacterized protein
STRINGXP_008218369.11e-135(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.13e-45ERF family protein