PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G256900.1.p
Common NamePRUPE_ppa002522mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 663aa    MW: 74056 Da    PI: 9.8519
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G256900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07569618147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Prupe.6G256900.1.p 569 RRPFSVPEVEALVQAVEKLGTGRWRDVKLRAFdgaKHRTYVDLKDKWKTL 618
                         567888899*****************99888889*************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.0E-5376448IPR029071Ubiquitin-related domain
PROSITE profilePS5129413.67564623IPR017930Myb domain
SuperFamilySSF466899.44E-15566654IPR009057Homeodomain-like
SMARTSM007178.2E-7568621IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-9569619IPR009057Homeodomain-like
CDDcd116601.91E-16570620No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MVLQRRLDYG FNGYQVPEVP RASRSARGRV PIKKKLEANQ IRAFEILASV AGKLLQESEH  60
PLPTNDSCGK DAHFIFDDTT KSKQEKGNLS KEDPCERGSC DEQTLLCVGR MQECQQSYTL  120
NGVSHSQENF SYEINRASKS FDHSESIYSN KIFSDSPLFG DSVEEKPRGV LKRKLETGPS  180
KDMSIKDERT QILGNSEDIM KVEGMPPELV SCGHDVKTSF SGDCKNHDPL LCHCANIKVD  240
SRDDDENCVR YAQPLSVVKE FEHPPDAGDE KINNLAASRH WRVAPERRIG GYSRNDGKIR  300
QVYRHGRNCY THQRSQKIYP FKKRKFFNRM PLATPDRGFN CESIFNSPDK RVNSDNYCAE  360
IGPSSSTTGG QVPLKSSDCN VKLSIKSFKV PDLFIEIPAT ATVGSLKRTV MEAVTSILGD  420
GLHVGILVRG KKVRDDNKTL LQTGISQDEK SRNLGFMLEP KRAKLTYSPR SKDPSLPSGR  480
SRELTRHSAS LVSQPGTSNV SPNPPVINFG GYVKRDLNAV PSLPSTSIEK TPQASQALVA  540
VPPISMNALA VVPFHRKSGH PEYVQRRIRR PFSVPEVEAL VQAVEKLGTG RWRDVKLRAF  600
DGAKHRTYVD LKDKWKTLVH TARISAQQRR GEPVPQELLD RVLAAHACWS QRRAKQQVKA  660
AV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-505536591107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315324QKIYPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206321.10.0hypothetical protein PRUPE_ppa002522mg
TrEMBLM5WL300.0M5WL30_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s08680.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-128TRF-like 2