PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G234200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 175aa    MW: 19109.3 Da    PI: 6.2225
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G234200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.81.9e-3481247104
                 TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 
                         ++ ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+ +i ++tgt++ +a+  ++++ s+s++ +s +         
  Prupe.6G234200.1.p   8 SSRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAESSIVAATGTGTLPAEPISTSAPSVSSQVPSLAcrahplssl 98 
                         689********************************************************88888666444444444433333445555566 PP

                 TCP  89 ..........kaaksaakskksqksa 104
                                    +++ +a+++++++++
  Prupe.6G234200.1.p  99 ngggqfmyplVSSAHQAQPNQPHQQP 124
                         66777777752222222444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.9E-308113IPR005333Transcription factor, TCP
PROSITE profilePS5136926.157963IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MHLFNSASSR DRHTKVNGRG RRVRMPAMCA ARIFQLTREL GHRSDGETIE WLLRHAESSI  60
VAATGTGTLP AEPISTSAPS VSSQVPSLAC RAHPLSSLNG GGQFMYPLVS SAHQAQPNQP  120
HQQPSIRLDL CQPAGLDYTE YRQHMPFTSL LLHPAENEEE EDGQQEEALC LEDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G234200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421941.11e-123transcription factor TCP11
SwissprotQ9SJK72e-35TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A251NUR81e-126A0A251NUR8_PRUPE; Uncharacterized protein
STRINGXP_008243974.11e-107(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.18e-35TCP family protein