PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G213800.1.p
Common NamePRUPE_ppa009614mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 286aa    MW: 31537.4 Da    PI: 8.4875
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G213800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-19140194256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  Prupe.6G213800.1.p 140 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 194
                         788899***********************************************98 PP

2HD-ZIP_I/II125.32.7e-40140229191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  Prupe.6G213800.1.p 140 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 229
                         69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-18123194IPR009057Homeodomain-like
SuperFamilySSF466895.01E-19129197IPR009057Homeodomain-like
PROSITE profilePS5007117.718136196IPR001356Homeobox domain
SMARTSM003891.0E-15138200IPR001356Homeobox domain
CDDcd000862.14E-17140197No hitNo description
PfamPF000463.2E-16140194IPR001356Homeobox domain
PROSITE patternPS000270171194IPR017970Homeobox, conserved site
SMARTSM003401.1E-25196239IPR003106Leucine zipper, homeobox-associated
PfamPF021835.5E-10196230IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGFDDHPCNT GLVLGLGLTT SSPQESTSPP KAHNPSRFAN KPSPNSAPTS ATFEPSLTLG  60
LPGEPYHQLV ASNYKGGGNS HEEAIDLYRQ ASSPHSHSAV SSFSSGRVVK RERDLSSEEV  120
EVEKVSSRVS DEDEDGSNAR KKLRLTKEQS ALLEESFKQH STLNPKQKQA LARQLNLRPR  180
QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE TLTDENRRLQ KELQELKALK LSQPLYMHMP  240
AATLTMCPSC ERIGGVGSEG ASKSPFSMAP KPHFYNHFTN PSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188196RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.40970.0fruit
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G213800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205679.10.0homeobox-leucine zipper protein HAT22
RefseqXP_008237058.10.0PREDICTED: homeobox-leucine zipper protein HAT22
SwissprotP466041e-101HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLM5WC800.0M5WC80_PRUPE; Uncharacterized protein
STRINGXP_008237058.10.0(Prunus mume)
STRINGEMJ068780.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.19e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]