PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G182200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 374aa    MW: 41331.3 Da    PI: 7.0623
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G182200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20179228255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Prupe.6G182200.1.p 179 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 228
                         59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-33178238No hitNo description
SuperFamilySSF541712.75E-23179237IPR016177DNA-binding domain
PROSITE profilePS5103223.143179236IPR001471AP2/ERF domain
SMARTSM003807.1E-38179242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-32179237IPR001471AP2/ERF domain
PRINTSPR003673.7E-11180191IPR001471AP2/ERF domain
PfamPF008473.8E-14180228IPR001471AP2/ERF domain
PRINTSPR003673.7E-11202218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MATAIDLYSS SSMTPDLSDS LREDQLMKAL MPFMKSVSST SSLTSISSSI SSPTSPSTSS  60
SFSSYPSYTY HPPLYSTQPN LYPDFCSPST THMFDQVSFE QTGSIGLNQL TPSQILQIQT  120
QMVLQQQQEH QQKEQIAALA SPASLQNQYQ HQNPRTPKFL SPKAIPMKQV GAPSKPTKLY  180
RGVRQRHWGK WVAEIRLPKN RTRLWLGTFD TAEEAALAYD KAAYKLRGDF ARLNFPHLKH  240
QGAHVSGDFG HYKPLHSSVD AKLQAICQSL AANSAKQGKT GELCSVAERK PAITSPKEVS  300
LKTELKSEWE LTGVECYRPE ISSSPSRSVE SSAGSSSPES DITFLEFSDS QWDEAENFGL  360
EKYPSVEIDW SAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-22178236160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.33270.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT3695530.0KT369553.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205497.10.0hypothetical protein PRUPE_ppa008234mg
TrEMBLM5VZZ90.0M5VZZ9_PRUPE; Uncharacterized protein
STRINGPOPTR_0005s07900.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-58related to AP2 4