PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G176400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 180aa    MW: 20308.7 Da    PI: 9.9329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G176400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.19.4e-134889247
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                        +y+G+r +k  g+WvAeIr+p   +kr r++lg++ t+  A +a++
  Prupe.6G176400.1.p 48 QYRGIRMRK-EGKWVAEIREP---NKRSRIWLGSYTTPVAATRAYE 89
                        7*******9.7*********9...336*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-164788No hitNo description
Gene3DG3DSA:3.30.730.103.3E-194792IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-134895IPR016177DNA-binding domain
PROSITE profilePS5103215.6248105IPR001471AP2/ERF domain
PfamPF008471.7E-64889IPR001471AP2/ERF domain
SMARTSM003801.1E-1348102IPR001471AP2/ERF domain
PRINTSPR003676.8E-64960IPR001471AP2/ERF domain
PRINTSPR003676.8E-67187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEGEYCCSSS SSSSTTTTTS IEKGKQRQNQ QQQQQVGGNH DHRHQEKQYR GIRMRKEGKW  60
VAEIREPNKR SRIWLGSYTT PVAATRAYET TVCPYTPQLH NMSAASIRNK ATEVGAKVDA  120
VETAHCSPTS QSKTTSSLVN SQKPNLNKYL DPENSDEKLI EKKRGRKREG KEIIYIYIL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G176400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007223577.17e-74ethylene-responsive transcription factor ERF011
RefseqXP_007223578.17e-74ethylene-responsive transcription factor ERF011
RefseqXP_021820292.17e-74ethylene-responsive transcription factor ERF011-like
SwissprotQ9SNE14e-32ERF11_ARATH; Ethylene-responsive transcription factor ERF011
TrEMBLA0A251NRW31e-130A0A251NRW3_PRUPE; Uncharacterized protein
STRINGEMJ247763e-73(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.14e-33cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shen PC,Hour AL,Liu LD
    Microarray meta-analysis to explore abiotic stress-specific gene expression patterns in Arabidopsis.
    Bot Stud, 2017. 58(1): p. 22
    [PMID:28510204]