PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G106200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 532aa    MW: 60643.5 Da    PI: 8.4007
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G106200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.71.3e-08358406348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         +WT  E  +l+++v q G g+W++  r +     +Rt+ ++k++w+++l
  Prupe.6G106200.2.p 358 SWTSSEVMKLIEGVSQCGVGRWSAMKRLLFsscSHRTAVDIKDKWRNLL 406
                         6***********************888887*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.187351410IPR017930Myb domain
SMARTSM007171.5E-9355408IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-12358407IPR009057Homeodomain-like
PfamPF002495.9E-7358406IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-14358412IPR009057Homeodomain-like
CDDcd116608.56E-17359407No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MFQGTDNAVC HGRISLPTCQ EYLWEAKHSD KVFKSEGGPD SCLQNAGLES HSPGVYKEYC  60
GAEMSDLSCE STPRLGYKDN RSSLLLDHMS VQERQLVFRN MFRYETPVID KQWPKHSISP  120
GLQNFFGLES GSNLAECGLM TTKNEVKTVL SSSIEFFGKD TGTIKGSLSD EGMSRDLQVK  180
WKKLADLESL KTSNSRVSEI ELCSSDERDK AGAFAMQKRS RRPPRRYIEE LAESKSKFYS  240
RKCGVACKRS KNSFLHVRSD KNNRQKETQE ETLLCQDKSY EVGCIQVPFG LPVEAGQLEE  300
HNSSLNSEDC KDHRLLRSSE KLEIEYSPAK SREEISDDEC VLRRSTQKDS KQIKHYTSWT  360
SSEVMKLIEG VSQCGVGRWS AMKRLLFSSC SHRTAVDIKD KWRNLLKASC TQLQKERKIK  420
RDISKQASDH VPESVLQRVR ELAVIYPYPR RKRIFSKIPR YRDRTGQLQC LESTFCIQGI  480
CCNNNSEDCK DHRLLGSSEK LEIEYSPAKS REEISEDESV SRINTRKGQM A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008226089.10.0PREDICTED: uncharacterized protein LOC103325679 isoform X2
TrEMBLM5W6280.0M5W628_PRUPE; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.21e-23TRF-like 3