PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G074100.2.p
Common NamePRUPE_ppa002403mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 677aa    MW: 74245.9 Da    PI: 9.2467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G074100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07578627147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Prupe.6G074100.2.p 578 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 627
                         6789999*******************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.03E-7387478IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.641573632IPR017930Myb domain
SMARTSM007172.0E-7577630IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10578628IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15579660IPR009057Homeodomain-like
CDDcd116602.22E-17579629No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPATP RATRSARRRG AIRKRVDDNS MGAFDLLATI AGKLLLEGES  60
SPASSHTSKD QCAGTKENCL DGDKPLKVEP CDQGSCDRRI PVSDHISQGP NQSSCSKESP  120
VHQNESSVMT TSNCSERFAS DMLVSGKCKN ETGSFTSKIE AGSSGCREAG EFKLGGEVKT  180
LIKDETNKSA KVLIGTGPDM CGLEDPVVWE GEPPALVSSD SSTKVPMYVD HIPQRSFPTS  240
RDDVKVVSRD DDENSSGCTH PVTSIKYSRP APSRIGDRRI RKILASKYWK VAPKLKDDIH  300
SNSYRDQKPN YHNRKNCYKR QRSQMNIPFK KRKLFDRSAV LNIDEGISRE GFFDSRGKGI  360
TGDASCSKMQ GAAMKSSSLA GQHSSFQSRS SHVKLRIKSF RVPELFIEIP DTATVGSLKK  420
TVMDAVTAVL GGGLCVGVLL QGKKVRDDNK TLLQTGISQD NQLDSLGFTL EPNSSQNPPP  480
LCSGDSPCML PCDVLQPLTR YPSGPTSEAS PEPHTASLGN FIESDHDSAP SPTDMSAEKS  540
TTDSKALVAV PDMSVEALAV VPGHRKSKRF DIGQRRIRRP FSVAEVEALV QAVEKLGTGR  600
WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLTAHAYWSQ  660
QQAKQQLKQP ETCLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-565626681107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.204080.0shoot
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208711.10.0hypothetical protein PRUPE_ppa002403mg
TrEMBLM5WSY30.0M5WSY3_PRUPE; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-120TRF-like 2