PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G074100.1.p
Common NamePRUPE_ppa002403mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 687aa    MW: 75493.5 Da    PI: 9.3483
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G074100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07588637147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Prupe.6G074100.1.p 588 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 637
                         6789999*******************9988889**************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.03E-7397488IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.641583642IPR017930Myb domain
SMARTSM007172.0E-7587640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10588638IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15589670IPR009057Homeodomain-like
CDDcd116602.94E-17589639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPATP RATRSARRRG AIRKRVDDNS MGAFDLLATI AGKLLLEGES  60
SPASSHTSKD QCAGTKENCL DGDKPLKVEP CDQGSCDRRI PVSDHISQGP NQSSCSKESP  120
VHQNESSVMT TSNCSERFAS DMLVSGKCKN ETGSFTSKIE AGSSGCREAG EFKLGGEVKT  180
LIKDETNKSA KVLIGTGPDM CGLEDPVVWE GEPPALVSSD SSTKVPMYVD HIPQRSFPTS  240
RDDVKVVSRD DDENSSGCTH PVTSIKYSRP APSRIGDRRI RKILASKYWK VAPKLKDDIH  300
SNSCKWLPCT KRMYRDQKPN YHNRKNCYKR QRSQMNIPFK KRKLFDRSAV LNIDEGISRE  360
GFFDSRGKGI TGDASCSKMQ GAAMKSSSLA GQHSSFQSRS SHVKLRIKSF RVPELFIEIP  420
DTATVGSLKK TVMDAVTAVL GGGLCVGVLL QGKKVRDDNK TLLQTGISQD NQLDSLGFTL  480
EPNSSQNPPP LCSGDSPCML PCDVLQPLTR YPSGPTSEAS PEPHTASLGN FIESDHDSAP  540
SPTDMSAEKS TTDSKALVAV PDMSVEALAV VPGHRKSKRF DIGQRRIRRP FSVAEVEALV  600
QAVEKLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR  660
VLTAHAYWSQ QQAKQQLKQP ETCLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-565726781107Telomere binding protein TBP1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.204080.0shoot
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222420.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
TrEMBLM5WSY30.0M5WSY3_PRUPE; Uncharacterized protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-117TRF-like 2