PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G041400.1.p
Common NamePRUPE_ppa006097mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bZIP
Protein Properties Length: 442aa    MW: 47408.3 Da    PI: 6.569
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G041400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.7e-10242290553
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 
                         kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l   +
  Prupe.6G041400.1.p 242 KRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQ 290
                         9****************************************99887655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-15238302IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.829240303IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-11242293No hitNo description
PfamPF001701.8E-8242290IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.9E-10242296No hitNo description
CDDcd147037.35E-23243292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSTETRPMQD PQQHQSNPNP KFISINNASS NNPNPKSNPI PLPRSIGISN NANASGVAAT  60
SSSSSSLTSL TLTMLGNSNA PKPFIREEAG AAAAAEAGPH HHNSHRRAHS EVSFRLPQDM  120
MDLSAPDQSK GGSSTASLEE MGSEEDLFST YIDLDKLGGC NCSDQSGGGN KGPNGGPDDG  180
SGEPNVNDGG GGEGEEKRSS RHRHSCSVDG SSTSTGVFGE VMEAKKAMPP DKLAELWNLD  240
PKRAKRILAN RQSAARSKER KARYIQELER KVQTLQTEAT TLSAQLTLFQ RDTTGLSTEN  300
TELKLRLQAM EQQAQLRDAL NEALKKEVER LKIATGEMMS PSESFNLGMH QMPYNHPSAY  360
FPLQQQPGPA GHQNMQMPQF NHSQSNMPTH LLHQSNSHTF SDIMQNGPVG QLQGLDIGTK  420
GAPLVKSEGP SLSASESSTT F*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.5790.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at high levels in roots, low level in leaf sheath, but not in leaf blade. Predominantly expressed in vascular tissues. {ECO:0000269|PubMed:14704272}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G041400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422431.10.0transcription factor RF2b
SwissprotQ6S4P41e-100RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A251NJZ90.0A0A251NJZ9_PRUPE; Uncharacterized protein
STRINGEMJ064360.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15483497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.19e-94bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]