PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G037000.1.p
Common NamePRUPE_ppa025834mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 411aa    MW: 46253.6 Da    PI: 6.9403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G037000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS389.73.2e-119134091373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal.......... 81 
                         +++lL++cAe +s+ d++ a++l++ ls  +sp gd+++Rl++ f++AL+ rl++  ++ ++al++ +t+  +ss++   l          
  Prupe.6G037000.1.p  13 MRQLLITCAELISQLDFSSARRLISLLSSKSSPFGDSTERLTHQFVKALSLRLNNPNPSSSAALTTAATAAASSSSNYLLLeeeddnnnee 103
                         589****************************************************999999888777776555333333334556666666 PP

                GRAS  82 ......klfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp........egppslRiTgvgspesgskee 157
                                ++++++P+++fshltaNqaIlea++++ + +Hi+Dfdi++G+QWp+L+qaL++R+        ++pp+lRiT+ g+    s   
  Prupe.6G037000.1.p 104 alhscyLTLNQITPFIRFSHLTANQAILEAIDSShHSIHILDFDIMHGVQWPPLMQALTDRSynsdrtvqHPPPMLRITATGH----SLAL 190
                         65554355************************99899*************************766666655699*********....99** PP

                GRAS 158 leetgerLakfAeelgvpfefnvl....vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244
                         l +tg+rL kfA++lg+ f+f++l    +++  + +++++L + p+EalaVn+vl lh+l+ ++       + +L+ +ksl+Pkv++++++
  Prupe.6G037000.1.p 191 LLKTGDRLLKFANSLGLAFHFHPLvlndAVQPSDIISPSTLGLLPNEALAVNCVLYLHTLVTDDSREL---SLFLRKIKSLNPKVLTIANK 278
                         ************************766666678999************************95555544...59****************** PP

                GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek.WrerleeaGFkpvplsekaa 334
                         ea+hn++ F++rf+eale+y a+fdslea+lp++s+er+ vE +++grei++vv +e+ +rr+rhe++e+ W+ +l++aGF++v+ls +a 
  Prupe.6G037000.1.p 279 EANHNHPLFFNRFVEALEHYGAVFDSLEATLPPNSRERQAVEDVWMGREIRDVVGAEEGRRRQRHEKYETyWEVMLRRAGFENVALSPFAL 369
                         *******************************************************************9866******************** PP

                GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                         +qaklllr ++ s+gy++   ++s++lgW++rpL+svS+W
  Prupe.6G037000.1.p 370 SQAKLLLRLHYpSEGYQLRIINDSFFLGWQNRPLFSVSSW 409
                         **************************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.9381389IPR005202Transcription factor GRAS
PfamPF035141.1E-11613409IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MPRGLMTTSP THMRQLLITC AELISQLDFS SARRLISLLS SKSSPFGDST ERLTHQFVKA  60
LSLRLNNPNP SSSAALTTAA TAAASSSSNY LLLEEEDDNN NEEALHSCYL TLNQITPFIR  120
FSHLTANQAI LEAIDSSHHS IHILDFDIMH GVQWPPLMQA LTDRSYNSDR TVQHPPPMLR  180
ITATGHSLAL LLKTGDRLLK FANSLGLAFH FHPLVLNDAV QPSDIISPST LGLLPNEALA  240
VNCVLYLHTL VTDDSRELSL FLRKIKSLNP KVLTIANKEA NHNHPLFFNR FVEALEHYGA  300
VFDSLEATLP PNSRERQAVE DVWMGREIRD VVGAEEGRRR QRHEKYETYW EVMLRRAGFE  360
NVALSPFALS QAKLLLRLHY PSEGYQLRII NDSFFLGWQN RPLFSVSSWH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-60154106375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007206810.10.0hypothetical protein PRUPE_ppa025834mg
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLM5W2S90.0M5W2S9_PRUPE; Uncharacterized protein
STRINGPOPTR_0012s02710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129262133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-118GRAS family protein