PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G035400.1.p
Common NamePRUPE_ppa020870mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 608aa    MW: 65857.1 Da    PI: 7.8945
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G035400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000436484323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C+ C+k Fs+   L  H+r+H
  Prupe.6G035400.1.p 64 CEVCNKGFSSGKALGGHMRMH 84
                        ********************9 PP

2zf-C2H215.74.2e-05138158323
                         ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                         C  Cgk F++  +L  H+r+H
  Prupe.6G035400.1.p 138 CCVCGKNFPSMKSLFGHMRSH 158
                         9*******************9 PP

3zf-C2H217.61e-05431453123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ CgksF+++  L  H+++H
  Prupe.6G035400.1.p 431 YKCSLCGKSFPSHQALGGHMSSH 453
                         9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.116284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7236289IPR007087Zinc finger, C2H2
PfamPF139127.8E-86284IPR007087Zinc finger, C2H2
SuperFamilySSF576679.99E-56386No hitNo description
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
SMARTSM003550.33136158IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432136163IPR007087Zinc finger, C2H2
SuperFamilySSF576673.46E-9138158No hitNo description
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
PfamPF139124.2E-6138160IPR007087Zinc finger, C2H2
SuperFamilySSF576673.46E-9426453No hitNo description
PfamPF139128.9E-10430454IPR007087Zinc finger, C2H2
SMARTSM003553.7E-4431453IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-4431455IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.843431458IPR007087Zinc finger, C2H2
PROSITE patternPS000280433453IPR007087Zinc finger, C2H2
SuperFamilySSF576679.93E-5519546No hitNo description
PfamPF139121.5E-11521545IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974522544IPR007087Zinc finger, C2H2
SMARTSM003550.062522544IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280524544IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MDVEDQETRF RPRAGDQEQQ PNKKTNQETE SNNGGLFAKL KFPKPEPLDQ ERKYPAPPEF  60
TRICEVCNKG FSSGKALGGH MRMHVQANRE LFQARKNKIK KPTKILKPNN SDVSSSNGGG  120
GFGVEGNSNS NSSMKPDCCV CGKNFPSMKS LFGHMRSHPE REWRGIQPPP TIAKNSSSST  180
LSDAVPQNNN KADDHQIDSA ATPVGSNNSA PDLSKTLPGW SLTARRGRKS IGSSGNSESV  240
SGLELSLGVE EQMEEAVHDL LMLAQSNPCF YGLSDKGKGA EMCEATNSNF FITNNSNQAD  300
YIKDKNQVID YEGTSKKRKG TEMCFPSKNM KSEKKWFDDY DGMKGKGVLG IGFGPEKPSV  360
KNFSKLGPME DNKNNNIEEE LSDSQNSESI VLASMKRRKR RKMKLIDLEG VVGEIIGAQG  420
HHQSLHQKLR YKCSLCGKSF PSHQALGGHM SSHNKLKNNN NNIIVNHSSL DDQSASADVS  480
AAEGGHNLDE AQTTMALDQD HHVAGAGSGS GAGGLGAHQA HHQCKICDKI FPTGQALGGH  540
KRCHWTGPTE QLLPQSSQAP SPGEASQNAG RKVLNFDLNE LPATEFEEGT DQYGAAGYAT  600
SSHNSVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395401KRRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G035400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421024.10.0uncharacterized protein LOC18775198
TrEMBLA0A251NJR10.0A0A251NJR1_PRUPE; Uncharacterized protein
STRINGEMJ078350.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-16C2H2 family protein