PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G217200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 469aa    MW: 53623.2 Da    PI: 6.7635
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G217200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.69.1e-381723343133
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa..sec...eaesss 79 
                          k+drhski T++g+RdRR+Rls+e+a++fF Lqd L fdk+skt+eWLl qa p+ik+l+g+         s+s+a  ++c   +     
  Prupe.5G217200.2.p 172 CKRDRHSKINTARGLRDRRMRLSLEVARKFFWLQDALHFDKASKTVEWLLIQATPEIKKLVGDckhmmsstkSTSPAtsESCeviS---GI 259
                         69*************************************************************99888766633333323333331...22 PP

                 TCP  80 ssasnsssg.........................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                          +a+    +                          +ak+ +  +++ +++++++ l+k sr+kararare+ rek+r+ 
  Prupe.5G217200.2.p 260 DEAA----TntnihinidggndgddklirsceiqPSAKERKVARRQLSRKTAFHPLSKASREKARARAREKAREKQRTH 334
                         2222....12334466888999999******9984444444444555555557**********************9976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.1E-40173333IPR005333Transcription factor, TCP
PROSITE profilePS5136929.99173231IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.291313330IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MFPSNSNNNL NNTGNELPVS YSHVDQSFFH SRPFLHEITT LNPNSLHPNP NSKQEEEEEQ  60
QQQQEGPHHH PLSFFYIPSP FEDDDVSLFQ QHHHYDHHHD HVHDMPLHDS QAPPLTTMRE  120
AVAANNTLAD DHRQTTTTST TLNIKMVDWD SNKNHGEMMN MDQPQIPRRR SCKRDRHSKI  180
NTARGLRDRR MRLSLEVARK FFWLQDALHF DKASKTVEWL LIQATPEIKK LVGDCKHMMS  240
STKSTSPATS ESCEVISGID EAATNTNIHI NIDGGNDGDD KLIRSCEIQP SAKERKVARR  300
QLSRKTAFHP LSKASREKAR ARAREKAREK QRTHQRVVDV DDQSKKQRGD QENLSRLSSW  360
SPFETGEESA GTQSHNNNNN ININSLEGLV HHEIEEPMSS CQVGDHPDLV VDHGTTHDPL  420
VIMGKWSPPS IFSSLHQNIG ISQEHHQFAD FQFLGKPWEV YNNTHNLF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G217200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419087.10.0transcription factor CYCLOIDEA
RefseqXP_020419089.10.0transcription factor CYCLOIDEA
RefseqXP_020419090.10.0transcription factor CYCLOIDEA
TrEMBLA0A251PBZ80.0A0A251PBZ8_PRUPE; Uncharacterized protein
STRINGXP_008244033.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.29e-23TCP family protein