PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G213800.1.p
Common NamePRUPE_ppa018710mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 225aa    MW: 25367.4 Da    PI: 8.5972
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G213800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-174291255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ GVr+++ +grWvAeI+d s   ++ r +lg+f+ aeeAa a+++a++ l+g
  Prupe.5G213800.1.p 42 RFLGVRQRP-SGRWVAEIKDSS---QKLRLWLGTFDKAEEAALAYDKAARLLRG 91
                        577******.7*********42...36***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.15E-314199No hitNo description
PROSITE profilePS5103219.9154299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-284299IPR001471AP2/ERF domain
SMARTSM003801.3E-3342105IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1943100IPR016177DNA-binding domain
PRINTSPR003676.1E-74354IPR001471AP2/ERF domain
PfamPF008478.3E-114591IPR001471AP2/ERF domain
PRINTSPR003676.1E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDSLDSKKVP ADDQFQTETF QENKERISAM RKVNSNNISG KRFLGVRQRP SGRWVAEIKD  60
SSQKLRLWLG TFDKAEEAAL AYDKAARLLR GRNAKTNFPC HIMNTHEENC SILRKNPKLY  120
QLLQHAIMKN HAIARSSSMR INPWDRNQIR GIDFDTLVEE TIVCSSSGNT SGQDHDDHED  180
RNKLCALSFG SCKVYSSVVV APSFSASSQT QCQQAHEEKG YQEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1640102366ATERF1
3gcc_A2e-1640102366ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211051.11e-170hypothetical protein PRUPE_ppa018710mg
TrEMBLM5WZK11e-170M5WZK1_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g04480.t016e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123492734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-16related to AP2 11