PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G206400.2.p
Common NamePRUPE_ppa014630mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 336aa    MW: 37157.8 Da    PI: 7.2382
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G206400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.72.2e-30591803115
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa......sec.eaesssssasnss 86 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   +  i++l+ ++ ++       +++ ++++s+ ++++s+
  Prupe.5G206400.2.p  59 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDVTEDDIDKLPPLQVPHGfahqfhQQMlNPHHSHDQGHQSN 149
                         78*************************************************************5555533222222244444444444444 PP

                 TCP  87 sg.........kaaksaakskksqksaasalnlakesr 115
                         ++         +       s++ ++++++++  +  ++
  Prupe.5G206400.2.p 150 NSlaaapffdvN-------SSFMEADHQAHQRSSTTTN 180
                         446655555432.......2222222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2860198IPR005333Transcription factor, TCP
PROSITE profilePS5136927.88460118IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MISNSREKGF QAKQEGHNNT NNDGNSSNFN KASSSSTTTS RQWSGFRNPR IVRVSRTFGG  60
KDRHSKVSTV RGLRDRRIRL SVPTAIQLYD LQDRLGLSQP SKVIDWLLDV TEDDIDKLPP  120
LQVPHGFAHQ FHQQMLNPHH SHDQGHQSNN SLAAAPFFDV NSSFMEADHQ AHQRSSTTTN  180
VGDRKGKSIK THDEQDDDDQ NHHQDGNIGG GQLLAQKLFP QGNHPSSIPG LLNNAMAYNY  240
YHNYSEPSSL SLSQFGGHGF PPVPQIDHHS HMMSNALSFS TSMPSGSQLF FCPSTATPSL  300
FGPYPPYITN PVVERVFEIL SNIGQSQAAP FEFTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1965119155Putative transcription factor PCF6
5zkt_B2e-1965119155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G206400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007209843.10.0transcription factor TCP5
TrEMBLA0A251PBC40.0A0A251PBC4_PRUPE; Uncharacterized protein
STRINGEMJ110420.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.13e-49TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5