PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G143200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 533aa    MW: 57674.4 Da    PI: 5.3523
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G143200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11347389754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Prupe.5G143200.1.p 347 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 389
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16343409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-13346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9346389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.01E-13347393No hitNo description
Gene3DG3DSA:4.10.280.106.4E-16347402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.22E-7461521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MLPRLNGAVW MGDREDRDSA SWNRTTAATT NNSNCGVVES KDELGSLSTF KSMLDVDDDW  60
YLPNNSIQSH SDVRDIAFSP SFADPESLLL NPVDSSSSCS PSSSVFNNLD PNQVHYYLPQ  120
NSTLSSLLNV VPNNPLEHGF DLGCDIGFLD TQASSGSSLM NRGGGVLTGF SGLSSNNPMN  180
AQDLCSNLQF STTRLPQLLE NSSNFSGFRG FEDTSANALF PNRPKLLRPL DSVPDVGAPP  240
TLFQKRVQKN LADNGGNLGV LGSEGGLALN HMGEENERKR KLSGGDDFED VSIDGSGLNY  300
DSDDFTENTK MDDGAKNGGN SSNANSTVTG GGDHKGKKKG LPAKNLMAER RRRKKLNDRL  360
YMLRSVVPKI SKMDRASILG DAIEYLKELL QKINNLHNEL ESIPPGSSLT PTGSTFHPLT  420
PTPATLPSRI KEELCPSSLP SPNGQPARVE VRLREGRAVN IHMFCGRRPG LLLSTMRTLD  480
SLGLDIQQAV ISCFNGFAMD VFRAEQCKEG QDVHPDQIKA VLLESVGFHG LI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336354KKKGLPAKNLMAERRRRKK
2348355ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT1488840.0KT148884.1 Prunus persica cultivar Jiubao inducer of CBF expression 1 (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239552.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-134ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW820.0A0A0S2CW82_PRUMU; Inducer of CBF expression a
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-133bHLH family protein