PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G141200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 232aa    MW: 25763.5 Da    PI: 9.5347
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G141200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.7e-195199254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        +y+GVr++k +g+W+AeIrdp   + +  r +lg+++tae Aa a+++a++ ++
  Prupe.5G141200.1.p 51 QYRGVRQRK-WGKWAAEIRDP---N-KaVRLWLGTYDTAEAAALAYDEAALGFK 99
                        69******9.**********9...3.35*********************98665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.39E-1950109No hitNo description
PROSITE profilePS5103224.10551108IPR001471AP2/ERF domain
SMARTSM003801.4E-3751114IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2151109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-3251109IPR001471AP2/ERF domain
PfamPF008473.0E-135296IPR001471AP2/ERF domain
PRINTSPR003671.7E-105263IPR001471AP2/ERF domain
PRINTSPR003671.7E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MISALAQVIG NTDQTPLQQV QGNPLITSQS SPAESRSQPA LQDRGNVRRQ QYRGVRQRKW  60
GKWAAEIRDP NKAVRLWLGT YDTAEAAALA YDEAALGFKG SKAKLNFPER VQESSEFGNL  120
TINTQQQHNL NNPENVERVQ VADPVVPNPP HQPIYCAPYV QGGSNSVDYN VHQVLPSHEN  180
YAPQILPTTS STSSSMPSQQ EELRRKQVGS SRSRSDLPNK YRKDFEGSHS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2150111163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the S phase of the cell cycle. {ECO:0000269|PubMed:23616605}.
UniprotTISSUE SPECIFICITY: Strongly expressed in proliferating cells. Detected in root tips, stipules, shoot apex, floral tissues, young siliques and abscission zones. {ECO:0000269|PubMed:23616605}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G141200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419871.11e-171ethylene-responsive transcription factor ERF115
SwissprotQ9FH541e-39EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A251P8991e-170A0A251P899_PRUPE; Uncharacterized protein
STRINGEMJ114341e-135(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.18e-18ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]