PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G106700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family WRKY
Protein Properties Length: 314aa    MW: 35248.5 Da    PI: 4.7317
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G106700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.3e-30128185258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                         +D ++WrKYGqK++kgs++prsYYrC+s+ gC+++k+vers ++p++++itY+ eHnh
  Prupe.5G106700.2.p 128 SDVWAWRKYGQKPIKGSPYPRSYYRCSSSkGCSARKQVERSCSNPETFIITYTAEHNH 185
                         79*************************998**************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-30113188IPR003657WRKY domain
PROSITE profilePS5081132.627122188IPR003657WRKY domain
SuperFamilySSF1182904.32E-25125188IPR003657WRKY domain
SMARTSM007748.6E-33127187IPR003657WRKY domain
PfamPF031064.9E-25129185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MENWDLQAVV RGCNTTANID EAMENSQIPY CFAPLSIEEE DDFFHALPQL FEATAALDEL  60
EELYKPFYPV LQPSAPPVIL ASSMSVPQEA ITVEVPKKLK ESSTVCKKIR KNQSKRVVKE  120
VRAEELFSDV WAWRKYGQKP IKGSPYPRSY YRCSSSKGCS ARKQVERSCS NPETFIITYT  180
AEHNHVHPTR RNSLAGSTRS KFPSSKNKDK CKSSLNSPAT TNLAASIEED HDVQSASTST  240
VKEEAQLLLE EDEISHENVM LDVMLSDEII PSLEDLDREL EPVMDGWFLD QFSDNFPSPW  300
FNIGHSNTVT GAC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-18118188877Probable WRKY transcription factor 4
2lex_A1e-18118188877Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00448DAPTransfer from AT4G23550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G106700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU0136833e-80GU013683.1 Malus x domestica transcription factor WRKY (WRKY) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020419021.10.0probable WRKY transcription factor 29 isoform X2
TrEMBLA0A251P6M00.0A0A251P6M0_PRUPE; Uncharacterized protein
STRINGXP_008239089.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23550.12e-40WRKY family protein