PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G090500.1.p
Common NamePRUPE_ppa021197mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ERF
Protein Properties Length: 241aa    MW: 27217.8 Da    PI: 8.061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G090500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75.2e-1759110155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++  + +Wv+e r+p++   + r++lg++ tae+Aa+a++ a+++++g
  Prupe.5G090500.1.p  59 PVYRGVRRRN-NDKWVCEMREPKKT--KSRIWLGTYPTAEMAARAHDVAALAFRG 110
                         68*****887.8*********9654..4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.5E-1359110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-3160120IPR001471AP2/ERF domain
SMARTSM003804.4E-2960124IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2160120IPR016177DNA-binding domain
PROSITE profilePS5103222.58960118IPR001471AP2/ERF domain
PRINTSPR003671.3E-76172IPR001471AP2/ERF domain
CDDcd000184.38E-2861120No hitNo description
PRINTSPR003671.3E-784100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MNRFFSHFSD SVDQPESSSL SDATVTTLRA SWSDEDVILA SSRPKKRAGR RVFKETRHPV  60
YRGVRRRNND KWVCEMREPK KTKSRIWLGT YPTAEMAARA HDVAALAFRG KLACLNFPDS  120
AWRLPVPASM DAMDIRRAAA EAAEGFRPVE FGGVSSSSSD EKERMVVQVE EKKKKKDSVK  180
MEKSRSLSLS YWDEEEVFDM PRLLDDMAQG LLLTPPQCLG GDIWDDMGTD ADVKLWSFSN  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1361118663ATERF1
3gcc_A3e-1361118663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5435010.0KC543501.1 Prunus persica CBF/DREB 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210989.11e-177hypothetical protein PRUPE_ppa021197mg
SwissprotQ9LN865e-62DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLM5WS921e-177M5WS92_PRUPE; CBF/DREB 5
STRINGPOPTR_0012s13870.16e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.12e-54C-repeat-binding factor 4