PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G088800.1.p
Common NamePRUPE_ppa018648mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 374aa    MW: 38836.1 Da    PI: 7.167
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G088800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.85.6e-36871942106
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasns 85 
                         ++++ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++        + + s sa+  
  Prupe.5G088800.1.p  87 PTRRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtlkIPTTASTSAD-- 175
                         57999***********************************************************8888855544433221111111222.. PP

                 TCP  86 ssgkaaksaakskksqksaas 106
                           +++++s++++k+++ s+++
  Prupe.5G088800.1.p 176 --DNSSPSSTTKKRKRPSNSE 194
                         ..2333333333333333332 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2992188IPR005333Transcription factor, TCP
PROSITE profilePS5136926.00393147IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTSYLEDQDD DGGTSDLSTS TGDPEDNNKN NGNRVVSTQP NFDETTAFQQ LKEEPIDSDP  60
PPQAHSIGMV PVAMQMPMSV AVPVSNPTRR ASTKDRHTKV EGRGRRIRIP ATCAARIFQL  120
TRELGHKSDG ETVRWLLEHA EQAIIEATGT GTVPAIAVSV GGTLKIPTTA STSADDNSSP  180
SSTTKKRKRP SNSEFVDLKN DAVSQSSGLA PVGPAAPQGL VPVWAVGGAG LMVPANAFWM  240
GPVGSGAGPS GPQPQIWALS PTVTPVFNVA GATRPISSFV ANNGGGVEVR APSPALSNSA  300
ASTSTVGPRA AKRSSTTMAP SVSSSSNNSN GSGSGASKAQ MLRDFSLEIY DKQELQFMGR  360
PVGPPTTHQH QTQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G088800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7844504e-83KP784450.1 Rosa chinensis putative TCP9 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211057.10.0transcription factor TCP9
SwissprotO646476e-73TCP9_ARATH; Transcription factor TCP9
TrEMBLM5WG460.0M5WG46_PRUPE; Uncharacterized protein
STRINGEMJ122560.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.14e-55TCP family protein