PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G053800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 563aa    MW: 65129.2 Da    PI: 8.393
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G053800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.77.2e-2222109290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                          Yn+YA+++GF+vr+ +++++ +++   +  + Cskeg+r +++ + + +  ++ etrtgC+a+++   ++ +g w+v++++++HnHela
  Prupe.5G053800.1.p  22 LYNSYATRTGFTVRRGQKRYN-TKKVLRQFSYFCSKEGFRLDSDPS-KVSMANKLETRTGCEARIRFAFQDdNGMWKVSHFVSKHNHELA 109
                         7****************9998.66779999************9999.89999****************9999****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1822109IPR004330FAR1 DNA binding domain
PfamPF105511.3E-34173267IPR018289MULE transposase domain
PfamPF044348.5E-5454483IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.854454490IPR007527Zinc finger, SWIM-type
SMARTSM005750.0032465492IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MESFEEDLLG KVVSTEEDAY NLYNSYATRT GFTVRRGQKR YNTKKVLRQF SYFCSKEGFR  60
LDSDPSKVSM ANKLETRTGC EARIRFAFQD DNGMWKVSHF VSKHNHELAM PEERQFLRSN  120
RKVSEAHLDC YNVVNKEKMV MIEAVQVDQE NRMTNFFWRD GRSRIDYDCF GDVVVFDTTY  180
RTNRYNMICA PFVGVNHHWK NVLFGCAFLL DEKTDSFIWL FETFLESMGG RKPKTIFTDQ  240
CQAMANGIEK VFPGVCHRLC SWHISQNAAR NLGSYYGNPE FNHMFNKCLQ GYCETKLEFQ  300
STWDDLLAKF NLTGNLWLKT LYSLCAKWCP VFSQHIFTAK TKSSQRSKST NNVFHQMSTK  360
TMSLTQFVHH YDKQAEKMHS RELEESFCCN QGLLSRISKS SGPLNHAATI YTRKIFKLFE  420
KEFVDSLGVM MHEVGSDGTI HSFELNEEGH KRVYIVQLNS LNCSISCSCE MFESMGLLCR  480
HTLTKYAKKG FEASEHGELL QTKGKASVTL RRNTLMRTTY DVLTKASETE NTTRIALQKL  540
REIAGLIEKE MIKSKGEDYF SI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G053800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020412974.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020422922.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A251P5L50.0A0A251P5L5_PRUPE; Uncharacterized protein
STRINGEMJ207290.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-81FAR1-related sequence 5