PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G040400.1.p
Common NamePRUPE_ppa007828mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 345aa    MW: 39145.2 Da    PI: 5.1333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G040400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-5361331128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtdeelv +yLk+kveg ++el evi+ +d+yk++Pw+Lp k  +   + ew+fF+ rd+ky++g+r+nratk+gyWkatgkd
  Prupe.5G040400.1.p   6 LPPGFRFHPTDEELVGYYLKRKVEGLEFEL-EVIPVIDLYKFDPWELPeKsFLPRCDMEWFFFCARDRKYPNGSRTNRATKAGYWKATGKD 95 
                         79****************************.99**************94333444677********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++v++ +++++g +ktLvfy+grap g +tdW+mheyrl
  Prupe.5G040400.1.p  96 RKVVC-QSTVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 133
                         *****.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.89E-604156IPR003441NAC domain
PROSITE profilePS5100557.5686156IPR003441NAC domain
PfamPF023654.0E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGGASLPPGF RFHPTDEELV GYYLKRKVEG LEFELEVIPV IDLYKFDPWE LPEKSFLPRC  60
DMEWFFFCAR DRKYPNGSRT NRATKAGYWK ATGKDRKVVC QSTVTGYRKT LVFYRGRAPL  120
GDRTDWIMHE YRLSDDLAQG PSGHQGVFAL CRVIKKNENA QKTNDSHGEP KAKRVGSASN  180
SGEDLSSTRI SNEPLNISDD LSSRASYQHN ESHYSSHVTS PYEVNPMAEF DPTSRETNPA  240
DFWVSPDFIL DSSKDYPQLQ EAMPNYFPQY KSAMASWQSY ENTESPYSSY PNFTGDVTMA  300
DNANQVADMS PFSGHTGYMG YYGNEEMQFE GFDQPSSLRN PTSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-54516216171NO APICAL MERISTEM PROTEIN
1ut4_B2e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_A2e-54516216171NO APICAL MERISTEM PROTEIN
1ut7_B2e-54516216171NO APICAL MERISTEM PROTEIN
3swm_A3e-54516219174NAC domain-containing protein 19
3swm_B3e-54516219174NAC domain-containing protein 19
3swm_C3e-54516219174NAC domain-containing protein 19
3swm_D3e-54516219174NAC domain-containing protein 19
3swp_A3e-54516219174NAC domain-containing protein 19
3swp_B3e-54516219174NAC domain-containing protein 19
3swp_C3e-54516219174NAC domain-containing protein 19
3swp_D3e-54516219174NAC domain-containing protein 19
4dul_A2e-54516216171NAC domain-containing protein 19
4dul_B2e-54516216171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.85151e-159shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G040400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4309452e-44AM430945.2 Vitis vinifera contig VV78X241223.4, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020418962.10.0NAC domain-containing protein 86
SwissprotO496971e-101NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A251P3I80.0A0A251P3I8_PRUPE; Uncharacterized protein
STRINGEMJ104980.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-104NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]