PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G036100.1.p
Common NamePRUPE_ppb019935mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 606aa    MW: 71598.7 Da    PI: 9.0719
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G036100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR169.76.8e-2237128188
                FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                         ++Y+eY+++ GF +r+++s+k+ +r +e+t+r+fvC  egk  +++++  +++e+ +++  ++gCka++++k+++ ++kw+v++++  HnH
  Prupe.5G036100.1.p  37 NYYEEYGRQEGFWIRTRSSSKTrRRLDEVTSRQFVCAHEGKYVPKNTSqkASEENDEKNIMKCGCKASMRIKLDRwSNKWKVSSFQDSHNH 127
                         69*************999888867889*************987776663366777789999****************************** PP

                FAR1  88 e 88 
                         +
  Prupe.5G036100.1.p 128 K 128
                         7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.6E-1937128IPR004330FAR1 DNA binding domain
PfamPF105514.9E-36247341IPR018289MULE transposase domain
PROSITE profilePS509669.94528564IPR007527Zinc finger, SWIM-type
SMARTSM005750.0071539566IPR006564Zinc finger, PMZ-type
PfamPF044345.8E-5541561IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
EIIQVKNGET STPKKKVTQL KAPYSGMVFD TMEEARNYYE EYGRQEGFWI RTRSSSKTRR  60
RLDEVTSRQF VCAHEGKYVP KNTSQKASEE NDEKNIMKCG CKASMRIKLD RWSNKWKVSS  120
FQDSHNHKPV TPERRMKMKS NRVMPKAAKI LTETFHEENL PIAKVPSIFG GPHIGFNNRD  180
CYNHLRNVRH RQLDGGDAQS VLTYFRKKQA ENPQFFYAIQ CDENGRAANF FWVDARSRMA  240
YNYFGDVVTF DTTYRTNKYD MPFAQFTGVN HHLQSIQFGC ALLQDETEVT FLWLFETWLE  300
AMGGRHPVSI ITDQDLAMKG AIAKIFPNTR HRLCLWHIKK KFAEKLSHVY FKKSKFKIQM  360
KKCIRSTYKI EEFEEKWKEL MKECELANDD WLNSLYDIRS SWVPVYNRGI FFAGMNTTGR  420
SEGINSFFDG FVTPTTNLRE FVVKYEQALK RIMDRESDED FESEHKYRIV NEGEFLLKHA  480
AKFYTRNVFN KFKDEWSKVT LYKVEEIPCD DEYHAYLVKT KLGEHEEFVV KLNLQTYKGM  540
CECQNFEFVG ILCRHLLKVF VRLDIDTLPD HFILPRWRQE ANKFRIMDFK SLVTNDGKEE  600
SDTTTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G036100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208966.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A251P3840.0A0A251P384_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ101650.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-145FAR1-related sequence 5