PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G010000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 881aa    MW: 99429.1 Da    PI: 6.5155
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G010000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.53.8e-1762136290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY+eYA+++GFs ++ +s++sk +g+++ r+fvC +eg ++++ ++              C+a+l+++++ ++kw+ tk+++eH+H+l+
  Prupe.5G010000.1.p  62 FYDEYARRLGFSSKVGQSSRSKPDGTTIAREFVCGREGLKRRHADS--------------CDAMLRIELKGQDKWVSTKFVKEHSHALV 136
                         9**************************************9998777..............***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.0E-1462136IPR004330FAR1 DNA binding domain
PfamPF105513.4E-29273364IPR018289MULE transposase domain
PROSITE profilePS5096610.93552588IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-10558586IPR007527Zinc finger, SWIM-type
SMARTSM005755.8E-8563590IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MDVEVIDVEG MGHRGMADDG DAERSEGGEV NNAENSEAHD EDGISEPYVG MEFNSEEAAK  60
TFYDEYARRL GFSSKVGQSS RSKPDGTTIA REFVCGREGL KRRHADSCDA MLRIELKGQD  120
KWVSTKFVKE HSHALVSPGK VHYLRPRRHF AGAAKNVAET YQGVGIVPSG VMYVSVDGNR  180
TPVEKSRVVR NTLSTESNRP VKNAITMNQL RPCSRRSTLG KDAQNLLEYF KKMQAENPGF  240
FYAIQLDEDN HMANVFWADA RSRAAYCHFG DAVTLDTTYR VNQYRVPFAP FTGVNHHGQT  300
VLFGCALLLD ESEASFIWLF KTFLTAMNDC HPVSFMTDQD RAIQTAVSQV FPEVRHCISK  360
SHVLREGQER LAHVCQAHPY FEVELYNCIN LTETIEEFEL SWDSILDKYD LRRNDWLQSL  420
YSARAQWVPV YFRDSFSAAI SPKPNQGHDG FFDGYVNQQT TLPMFFRQYE RALENSFERE  480
IEADFDTICT TPVLRTPSPM EKQAANLYTR KIFAKFQEEL VETFVYTANR IEGDGAISTF  540
RVAKFEDDHK AYIVTFNYPE MRANCSCQMF EYSGILCRHV LTVFTVTNVL TLPSHYILKR  600
WTRNAKSGTT LDERSGELHG QDSLTLRYNN LCREAIKYAE DGATTTETFI AAMTALRDGG  660
KKVSVVKKNV AKVAPPNSQV SVTGYDDRKN STSMSDMTPL LWPRQDEVMK RFNLNDAGAP  720
AQTVSDLNLP RMAPVSLHRD DGTPENMVVL PCLKSMTWVM ENKNSAPGNR VAVINLKLQD  780
YSRTISTESE VKFQLSRVSL EPMLRSMAYI SDQLSTPANK VAVINLKLQD AETTSGESEV  840
KFQVSRDTLG AMLRSMAYIR EQLSSAAEIQ SESVSKKLRK *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.66397e-72fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G010000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007211309.20.0protein FAR1-RELATED SEQUENCE 3
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A251P1K90.0A0A251P1K9_PRUPE; Uncharacterized protein
STRINGXP_008237973.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]