PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G006200.1.p
Common NamePRUPE_ppa022238mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 438aa    MW: 49281.4 Da    PI: 6.7325
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G006200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.13.5e-53221491128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL+ kv + ++     i+evd++++ePw+Lp ++k +++ewyfFs rd+ky+tg r+nrat +gyWkatgkd++
  Prupe.5G006200.1.p  22 LPPGFRFHPTDEELITFYLASKVYNGSFCG-VDIAEVDLNRCEPWELPDMAKMGDREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDRQ 111
                         79*************************877.34***************888899************************************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s+ +g+l g+kktLvfykgrap+g+kt+Wvmheyrl
  Prupe.5G006200.1.p 112 VYSAsTGALLGMKKTLVFYKGRAPRGHKTKWVMHEYRL 149
                         **9878889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-6315173IPR003441NAC domain
PROSITE profilePS5100558.95522173IPR003441NAC domain
PfamPF023651.3E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLGMEDAVMS ELSGEDINEQ GLPPGFRFHP TDEELITFYL ASKVYNGSFC GVDIAEVDLN  60
RCEPWELPDM AKMGDREWYF FSLRDRKYPT GLRTNRATGA GYWKATGKDR QVYSASTGAL  120
LGMKKTLVFY KGRAPRGHKT KWVMHEYRLH GHLSSYGGHA CKDEWVICRI NHKTGDKKIP  180
LQLDQVEVEA ASSNYNCLPP LLESPTAAAK PTFLQQGQCP HQSHNPMQMQ SPHPLPPFLF  240
RHQENDLKSL INPVVSQPHL FSSFPINALQ TQSSFSPTTT NSNTALLTND KNPSPLQSLL  300
FKSLFSSHDQ DCNNTIPKQC KTEPNYFSHF QTPANNNNNN CDLNSLNLME KNHHHLHQPN  360
TPYHQYSNHP NDPLLFDCLD YSVLGFPDAA GTATTVHEHD TCPSTAFNRA AFQTMLDLPP  420
IKVTGESWPL DYIMDAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-501717315168NAC domain-containing protein 19
3swm_B1e-501717315168NAC domain-containing protein 19
3swm_C1e-501717315168NAC domain-containing protein 19
3swm_D1e-501717315168NAC domain-containing protein 19
3swp_A1e-501717315168NAC domain-containing protein 19
3swp_B1e-501717315168NAC domain-containing protein 19
3swp_C1e-501717315168NAC domain-containing protein 19
3swp_D1e-501717315168NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at the globular stage, mostly in the apical part of the embryo. During the triangular stage, confined to the boundary of emerging cotyledons. Later restricted to the center of the apical part of the embryo and to seedling apex, at the boundaries of the cotyledon margins and the boundaries between the SAM and the cotyledons. Localized in a one-cell-wide ring at the boundary between trichomes or lateral roots and epidermis. Accumulates at the boundaries between leaf primordia and the shoot meristem and between floral primordia and the inflorescence meristem. Found in the adaxial axils of secondary inflorescences and pedicels, and in axiallary buds. In flowers, expressed in a ring at the bases of sepals and petals. In carpels, confined to the boundaries between ovule primordia. In ovules, localized in a ring at the boundary between the nucellus and the chalaza. In the mature embryo sac, detected in the two polar nuclei of the central cell. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
UniprotTISSUE SPECIFICITY: In a general manner, present at the boundaries between mersitems and araising primordia. {ECO:0000269|PubMed:12837947}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.5G006200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR8227070.0KR822707.1 Prunus persica NAC transcription factor blood (BL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007210663.10.0protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8514e-99NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLM5WDM10.0M5WDM1_PRUPE; Uncharacterized protein
STRINGEMJ118620.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78883347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-101NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]